fix lint and spelling

.fortitude.toml

@@ -1,5 +1,5 @@
 [check]
 # Ignored Rules and justification:
-ignore = ["E001","S001","S101","M011","F001","S041","T001","S101","S102","T002","T011","T042","M001"]
+ignore = ["E001","S001","S101","C121","S091","MOD011","C001","S101","S102","C002","PORT011","C072","C003","C131","C141","C092"]
 file-extensions = ["f90","fpp","fypp"]
 output-format = "pylint"

examples/1D_inert_shocktube/README.md

@@ -1,7 +1,7 @@
 # 1D Multi-Component Inert Shock Tube
 
 Reference: 
-> P. J. Martínez Ferrer, R. Buttay, G. Lehnasch, and A. Mura, “A detailed verification procedure for compressible reactive multicomponent Navier–Stokes solvers”, Comput. & Fluids, vol. 89, pp. 88–110, Jan. 2014. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1016/j.compfluid.2013.10.014
+> P. J. Martínez Ferrer, R. Buttay, G. Lehnasch, and A. Mura, “A detailed verification procedure for compressible reactive multicomponent Navier–Stokes solvers”, Computers & Fluids, vol. 89, pp. 88–110, Jan. 2014. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1016/j.compfluid.2013.10.014
 
 ## Initial Condition
 

examples/1D_reactive_shocktube/README.md

@@ -1,7 +1,7 @@
 # 1D Multi-Component Reactive Shock Tube
 
 References:
-> P. J. Martínez Ferrer, R. Buttay, G. Lehnasch, and A. Mura, “A detailed verification procedure for compressible reactive multicomponent Navier–Stokes solvers”, Comput. & Fluids, vol. 89, pp. 88–110, Jan. 2014. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1016/j.compfluid.2013.10.014
+> P. J. Martínez Ferrer, R. Buttay, G. Lehnasch, and A. Mura, “A detailed verification procedure for compressible reactive multicomponent Navier–Stokes solvers”, Computers & Fluids, vol. 89, pp. 88–110, Jan. 2014. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1016/j.compfluid.2013.10.014
 
 > H. Chen, C. Si, Y. Wu, H. Hu, and Y. Zhu, “Numerical investigation of the effect of equivalence ratio on the propagation characteristics and performance of rotating detonation engine”, Int. J. Hydrogen Energy, Mar. 2023. Accessed: Oct. 13, 2024. [Online]. Available: https://doi.org/10.1016/j.ijhydene.2023.03.190
 

misc/acc_devices.f90

@@ -23,4 +23,4 @@ program main
         print '(" - "I3" : "A" | "F0.2" GB | "A"")', i, devvendor, devmem, devname
     end do
 
-end program
+end program main

src/common/m_nvtx.f90

@@ -32,15 +32,15 @@ module m_nvtx
         subroutine nvtxRangePushA(name) bind(C, name='nvtxRangePushA')
             use iso_c_binding
 
-            character(kind=c_char, len=*) :: name
+            character(kind=c_char, len=*), intent(IN) :: name
         end subroutine nvtxRangePushA
 
         ! push range with custom label and custom color
         subroutine nvtxRangePushEx(event) bind(C, name='nvtxRangePushEx')
             use iso_c_binding
 
             import :: nvtxEventAttributes
-            type(nvtxEventAttributes) :: event
+            type(nvtxEventAttributes), intent(IN) :: event
         end subroutine nvtxRangePushEx
     end interface nvtxRangePush
 
@@ -54,8 +54,8 @@ end subroutine nvtxRangePop
 contains
 
     subroutine nvtxStartRange(name, id)
-        character(kind=c_char, len=*) :: name
-        integer, optional :: id
+        character(kind=c_char, len=*), intent(IN) :: name
+        integer, intent(IN), optional :: id
         type(nvtxEventAttributes) :: event
 
 #if defined(MFC_OpenACC) && defined(__PGI)

src/pre_process/m_perturbation.fpp

@@ -618,7 +618,7 @@ contains
 
     subroutine s_elliptic_smoothing(q_prim_vf)
 
-        type(scalar_field), dimension(sys_size) :: q_prim_vf
+        type(scalar_field), dimension(sys_size), intent(INOUT) :: q_prim_vf
         integer :: i, j, k, l, q
 
         do q = 1, elliptic_smoothing_iters

src/simulation/m_cbc.fpp

@@ -1500,7 +1500,7 @@ contains
             end if
         #:endfor
 
-    end subroutine
+    end subroutine s_any_cbc_boundaries
 
     !> Module deallocation and/or disassociation procedures
     subroutine s_finalize_cbc_module