Update notebooks

LorenFrankLab · Feb 9, 2024 · edd0cd1 · edd0cd1
1 parent da51f35
commit edd0cd1
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Showing 3 changed files with 7 additions and 5 deletions.
diff --git a/notebooks/51_MUA_Detection.ipynb b/notebooks/51_MUA_Detection.ipynb
@@ -856,8 +856,9 @@
     "import numpy as np\n",
     "\n",
     "fig, axes = plt.subplots(2, 1, sharex=True, figsize=(15, 4))\n",
-    "time, multiunit_firing_rate = (MuaEventsV1).get_firing_rate(mua_key)\n",
     "speed = MuaEventsV1.get_speed(mua_key).to_numpy()\n",
+    "time = speed.index.to_numpy()\n",
+    "multiunit_firing_rate = MuaEventsV1.get_firing_rate(mua_key, time)\n",
     "\n",
     "time_slice = slice(\n",
     "    np.searchsorted(time, mua_times.loc[10].start_time) - 1_000,\n",
@@ -947,7 +948,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.15"
+   "version": "3.9.18"
   }
  },
  "nbformat": 4,

diff --git a/notebooks/py_scripts/43_Decoding_SortedSpikes.py b/notebooks/py_scripts/43_Decoding_SortedSpikes.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.16.1
+#       jupytext_version: 1.16.0
 #   kernelspec:
 #     display_name: spyglass
 #     language: python

diff --git a/notebooks/py_scripts/51_MUA_Detection.py b/notebooks/py_scripts/51_MUA_Detection.py
@@ -5,7 +5,7 @@
 #       extension: .py
 #       format_name: light
 #       format_version: '1.5'
-#       jupytext_version: 1.16.1
+#       jupytext_version: 1.16.0
 #   kernelspec:
 #     display_name: spyglass
 #     language: python
@@ -75,8 +75,9 @@
 import numpy as np
 
 fig, axes = plt.subplots(2, 1, sharex=True, figsize=(15, 4))
-time, multiunit_firing_rate = (MuaEventsV1).get_firing_rate(mua_key)
 speed = MuaEventsV1.get_speed(mua_key).to_numpy()
+time = speed.index.to_numpy()
+multiunit_firing_rate = MuaEventsV1.get_firing_rate(mua_key, time)
 
 time_slice = slice(
     np.searchsorted(time, mua_times.loc[10].start_time) - 1_000,