Initial commit

.gitattributes

@@ -0,0 +1,2 @@
+linguist-language=python
+notebooks/* linguist-vendored

.gitignore

@@ -0,0 +1,93 @@
+# Matlab files
+*.mat
+
+# History files
+.Rhistory
+.Rapp.history
+
+# Session Data files
+.RData
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+/*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+.Rproj.user
+
+*.dat
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.DS_Store
+*.png
+*.mp4

.travis.yml

@@ -0,0 +1,20 @@
+language: python
+python:
+    - "3.6"
+notifications:
+  email: false
+install:
+  - sudo apt-get update
+  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+  - bash miniconda.sh -b -p $HOME/miniconda
+  - export PATH="$HOME/miniconda/bin:$PATH"
+  - hash -r
+  - conda config --set always_yes yes --set changeps1 no
+  - conda update -q conda
+  - conda info -a
+  - conda env create -f environment.yml
+  - source activate package_template
+  - python setup.py develop
+script: pytest --cov=package_template tests/
+after_success:
+    - coveralls

README.md

@@ -0,0 +1,29 @@
+# Package Name
+Add package description
+
+### Installation
+```bash
+pip install package_name
+```
+Or
+```bash
+conda install -c edeno package_name
+```
+Or
+```bash
+git clone <package.git>
+pip install .
+```
+
+### Usage
+
+### Developer Installation
+1. Install miniconda (or anaconda) if it isn't already installed.
+2. git clone <package.git>
+2. Setup editiable package with dependencies
+```bash
+cd <package folder>
+conda env create -f environment.yml
+conda activate package_name
+pip install --editable . --no-deps
+```

environment.yml

@@ -0,0 +1,27 @@
+name: package_template
+channels:
+- defaults
+- conda-forge
+dependencies:
+- "python>=3.6"
+- numpy
+- numba
+- scipy
+- scikit-learn
+- matplotlib
+- xarray
+- pandas
+- dask
+- tqdm
+- statsmodels
+- patsy
+- jupyter
+- jupyterlab
+- nb_conda
+- setuptools
+- pytest
+- pytest-cov
+- coveralls
+- autopep8
+- black
+- isort

notebooks/README.md

@@ -0,0 +1 @@
+Notebooks go here

postBuild

@@ -0,0 +1,3 @@
+#!/bin/bash
+
+python setup.py install

repository_name/__init__.py

@@ -0,0 +1 @@
+# flake8: noqa

setup.cfg

@@ -0,0 +1,2 @@
+[aliases]
+test=pytest

setup.py

@@ -0,0 +1,20 @@
+#!/usr/bin/env python3
+
+from setuptools import find_packages, setup
+
+INSTALL_REQUIRES = ['numpy', 'numba', 'scipy', 'scikit-learn', 'matplotlib',
+                    'xarray', 'pandas', 'dask', 'tqdm', 'statsmodels', 'patsy']
+TESTS_REQUIRE = ['pytest >= 2.7.1']
+
+setup(
+    name='package_template',
+    version='0.1.0.dev0',
+    license='MIT',
+    description=(''),
+    author='',
+    author_email='',
+    url='',
+    packages=find_packages(),
+    install_requires=INSTALL_REQUIRES,
+    tests_require=TESTS_REQUIRE,
+)

tests/README.md

@@ -0,0 +1 @@
+Tests go here.