Merge pull request #91 from smolins/glenn-update-petsc-pflotran-versi… #64
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| name: Alquimia CI | |
| on: [workflow_dispatch, push, pull_request] | |
| env: | |
| # Customizing build type | |
| BUILD_TYPE: DEBUG | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: package-install | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt -qq install gfortran libopenmpi-dev libhdf5-openmpi-dev hdf5-helpers | |
| - name: directories-variables | |
| run: | | |
| echo "PETSC_DIR=$HOME/petsc" >> $GITHUB_ENV | |
| echo "PETSC_ARCH=debug" >> $GITHUB_ENV | |
| echo "PFLOTRAN_DIR=$HOME/pflotran" >> $GITHUB_ENV | |
| echo "CRUNCH_DIR=$HOME/crunchtope-dev" >> $GITHUB_ENV | |
| echo "ALQUIMIA_DIR=$HOME/work/install" >> $GITHUB_ENV | |
| echo "ALQUIMIA_REPO_DIR=$HOME/work/alquimia-dev/alquimia-dev" >> $GITHUB_ENV | |
| - name: petsc-install | |
| run: | | |
| git clone https://gitlab.com/petsc/petsc.git --branch v3.20.0 $PETSC_DIR | |
| cd $PETSC_DIR | |
| echo "Alquimia >> Configuring petsc" | |
| PETSC_ARCH=$PETSC_ARCH ./configure --with-mpi=1 --with-debugging=1 --with-shared-libraries=1 --download-fblaslapack=1 --with-hdf5-dir=/usr/lib/x86_64-linux-gnu/hdf5/openmpi | |
| echo "Alquimia >> Building petsc" | |
| make | |
| - name: pflotran-install | |
| run: | | |
| git clone https://bitbucket.org/pflotran/pflotran --branch v5.0.0 $PFLOTRAN_DIR | |
| cd $PFLOTRAN_DIR/src/pflotran | |
| echo "Building libpflotranchem.a" | |
| make libpflotranchem.a | |
| - name: crunchflow-install | |
| run: | | |
| git clone https://bitbucket.org/crunchflow/crunchtope-dev $CRUNCH_DIR | |
| cd $CRUNCH_DIR/source | |
| git apply MakefileForAlquimia.patch | |
| echo "Building libcrunchchem.a" | |
| make libcrunchchem.a | |
| - uses: actions/checkout@v2 | |
| - name: configure | |
| run: | | |
| ls $HOME/work | |
| ls $HOME/runners | |
| mkdir $ALQUIMIA_REPO_DIR/build | |
| cd $ALQUIMIA_REPO_DIR/build | |
| cmake .. -DCMAKE_INSTALL_PREFIX=$ALQUIMIA_DIR -DCMAKE_C_COMPILER=`which mpicc` -DCMAKE_CXX_COMPILER=`which mpicxx` -DCMAKE_Fortran_COMPILER=`which mpif90` -DCMAKE_BUILD_TYPE=Release -DXSDK_WITH_PFLOTRAN=ON -DTPL_PFLOTRAN_LIBRARIES=$PFLOTRAN_DIR/src/pflotran/libpflotranchem.a -DTPL_PFLOTRAN_INCLUDE_DIRS=$PFLOTRAN_DIR/src/pflotran -DXSDK_WITH_CRUNCHFLOW=ON -DTPL_CRUNCHFLOW_LIBRARIES=$CRUNCH_DIR/source/libcrunchchem.a -DTPL_CRUNCHFLOW_INCLUDE_DIRS=$CRUNCH_DIR/source -DCMAKE_BUILD_TYPE=DEBUG -DCMAKE_C_FLAGS="-W -Wall -Wextra" -DCMAKE_CXX_FLAGS="-W -Wall -Wextra" -DCMAKE_Fortran_FLAGS="-W -Wall -Wextra" | |
| - name: build | |
| run: | | |
| cd $ALQUIMIA_REPO_DIR/build | |
| make -j2 | |
| - name: test | |
| run: | | |
| cd $ALQUIMIA_REPO_DIR/build | |
| make test |