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96 Open 43 Closed
96 Open 43 Closed
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Issues list

import RO relation for biolink predicate from biolink model
#148 opened Mar 28, 2024 by realmarcin
Is it possible/recommended to get the microbial traits at the Genus level?
#145 opened Mar 27, 2024 by sayalaruano
2
ingest bugbase phenotypes and predictions data sources
#141 opened Mar 21, 2024 by realmarcin
ingest BugSigDB data sources
#140 opened Mar 20, 2024 by realmarcin
ingest Names4Life data sources
#132 opened Mar 9, 2024 by realmarcin
refactor ECOCORE to PATO terms
#131 opened Mar 6, 2024 by realmarcin
filter out viruses from NCBI Taxonomy 'unclassified'
#126 opened Feb 26, 2024 by realmarcin
1
ingest the EC hierarchy data sources
#114 opened Feb 15, 2024 by realmarcin
3
look at FermentationExplorer data integration
#110 opened Feb 13, 2024 by realmarcin
use Taxallnomy to complete taxonomic lineages
#104 opened Jan 31, 2024 by realmarcin
NCBITaxon file ncbitaxon_removed_subset.json is not downloaded before Uniprot api is queried
#96 opened Jan 13, 2024 by bsantan
1
add transpoter hierarchy from TCDB data sources
#86 opened Dec 7, 2023 by realmarcin
consider MBROLES for metabolite roles
#85 opened Dec 1, 2023 by realmarcin
generate NCBITaxon SQLite
#72 opened Oct 25, 2023 by realmarcin
add ROBOT NCBITaxon slim at OBO Foundry
#71 opened Oct 25, 2023 by realmarcin
RIKEN media
#70 opened Oct 25, 2023 by realmarcin
additional media properties, possibly obsolete
#69 opened Oct 25, 2023 by realmarcin
sources of microbial media types
#68 opened Oct 25, 2023 by realmarcin
sources of microbial culturing media
#67 opened Oct 2, 2023 by realmarcin
strains and annotations from ATCC
#66 opened Oct 2, 2023 by realmarcin
review MicrobeAnnotator approach with KOFamscan
#65 opened Jul 5, 2023 by realmarcin
ingest UniProt reference proteomes + SwissProt data sources
#64 opened Apr 3, 2023 by realmarcin
ingest protraits data sources
#61 opened Mar 1, 2023 by realmarcin
ingest dbBact data data sources
#58 opened Jan 25, 2023 by realmarcin
Ingest ProGenomes3 data sources
#44 opened Nov 23, 2022 by realmarcin
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