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Issues list

Implement coarse-grained groups of reactions enhancement
#34 opened Nov 15, 2018 by jonrkarr updated Nov 15, 2018
Implement groups of species to enable primitive rules enhancement
#33 opened Nov 15, 2018 by jonrkarr updated Nov 16, 2018
1
Add implicit dFBA exchange reactions for metabolic byproducts of other submodels enhancement future
#57 opened Nov 28, 2018 by jonrkarr updated Nov 29, 2018
Support area volumes (e.g. mol dm^-2) enhancement future
#35 opened Nov 15, 2018 by jonrkarr updated Nov 29, 2018
Update documentation enhancement
#61 opened Nov 29, 2018 by jonrkarr updated Nov 30, 2018
1
Raise exceptions if SBML is inconsistent with WC-Lang representation enhancement future
#112 opened Mar 22, 2019 by jonrkarr updated Mar 22, 2019
Define declarative mapping between WC-Lang and SBML and refactor SBML export/import enhancement future
#113 opened Mar 22, 2019 by jonrkarr updated Mar 22, 2019
Verify protonation state consistent with pH enhancement
#105 opened Jan 30, 2019 by jonrkarr updated Mar 28, 2019
Add class to represent verifications enhancement
#94 opened Jan 27, 2019 by jonrkarr updated Mar 29, 2019
@jonrkarr
1
Add provenance attributes enhancement
#115 opened Apr 4, 2019 by jonrkarr updated Apr 7, 2019
@jonrkarr
Support complex species
#116 opened Apr 8, 2019 by jonrkarr updated Apr 8, 2019
Add schema migration to command line program enhancement
#64 opened Nov 30, 2018 by jonrkarr updated Jun 18, 2019
@artgoldberg @jonrkarr
1
Use standard metadata models enhancement
#118 opened Jun 18, 2019 by artgoldberg updated Jun 18, 2019
Rate law support for lumped reactions enhancement
#119 opened Jun 25, 2019 by jonrkarr updated Jul 19, 2019
1
Writer support for obj_model migration enhancement future
#122 opened Jul 30, 2019 by artgoldberg updated Jul 30, 2019
@artgoldberg
Add optional validation for molecules all defined enhancement
#123 opened Aug 16, 2019 by jonrkarr updated Aug 16, 2019
Add reaction type attribute enhancement
#124 opened Sep 3, 2019 by jonrkarr updated Sep 3, 2019
Finish supporting bcforms enhancement
#127 opened Sep 25, 2019 by jonrkarr updated Sep 25, 2019
@jonrkarr
Infer units for numeric literals enhancement
#131 opened Dec 19, 2019 by artgoldberg updated Dec 19, 2019
Capture additional model metadata
#132 opened Jan 11, 2020 by jonrkarr updated Jan 11, 2020
Fix to freezing first column bug
#133 opened Jan 11, 2020 by jonrkarr updated Jan 13, 2020
Complete support for Data repo metadata bug
#134 opened Jan 13, 2020 by jonrkarr updated Jan 13, 2020
Change reaction arrow from "==>" to <=>
#136 opened Mar 18, 2020 by jonrkarr updated Mar 18, 2020
Export provenance, validation as separate XML file to SBML enhancement future
#103 opened Jan 30, 2019 by jonrkarr updated May 13, 2020
@jonrkarr
get_model_summary should be more comprehensive enhancement
#139 opened Jul 4, 2020 by artgoldberg updated Jul 4, 2020
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