Create guanidinoacetate.py

KarrLab · Apr 30, 2021 · 4ccfe42 · 4ccfe42
1 parent a4b63b7
commit 4ccfe42
Showing 1 changed file with 26 additions and 0 deletions.
diff --git a/added_reactions/guanidinoacetate.py b/added_reactions/guanidinoacetate.py
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+# guanidinoacetate reaction
+
+# EC number 2.1.4.1 https://biocyc.org/META/NEW-IMAGE?type=REACTION&object=GLYCINE-AMIDINOTRANSFERASE-RXN
+
+arg__L = model.metabolites.get_by_id("arg__L_c")
+gly = model.metabolites.get_by_id("gly_c")
+guanidinoacetate = Metabolite(
+    "guanidinoacetate_c",
+    formula="C3H7N3O2",
+    name="guanidinoacetate",
+    compartment="c"
+)
+orn = model.metabolites.get_by_id("orn_c")
+
+glyaminotranferase = Reaction("GLYCINE-AMIDINOTRANSFERASE-RXN")
+glyaminotranferase.name = "GLYCINE AMIDINOTRANSFERASE RXN"
+glyaminotranferase.add_metabolites(
+    {
+        arg__L: -1.0,
+        gly: -1.0,
+        guanidinoacetate: 1.0,
+        orn:1.0
+    }
+)
+
+model.add_reactions([glyaminotranferase]