Add PySR integration test #741
Workflow file for this run
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| name: Tests | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| jobs: | |
| julia: | |
| name: julia-${{ matrix.test-type }}-${{ matrix.os }}-jl${{ matrix.jlversion }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| arch: [x64] # x86 unsupported by MicroMamba | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| jlversion: ['1','1.6'] | |
| test-type: ['unit'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Julia ${{ matrix.jlversion }} | |
| uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.jlversion }} | |
| arch: ${{ matrix.arch }} | |
| - uses: actions/cache@v1 | |
| env: | |
| cache-name: cache-artifacts | |
| with: | |
| path: ~/.julia/artifacts | |
| key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-test-${{ env.cache-name }}- | |
| ${{ runner.os }}-test- | |
| ${{ runner.os }}- | |
| - name: Build package | |
| uses: julia-actions/julia-buildpkg@v1 | |
| - name: Run tests | |
| uses: julia-actions/julia-runtest@v1 | |
| env: | |
| JULIA_DEBUG: PythonCall | |
| JULIA_NUM_THREADS: '2' | |
| - name: Process coverage | |
| uses: julia-actions/julia-processcoverage@v1 | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| if: ${{ matrix.test-type == 'unit' }} | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| python: | |
| name: python-${{ matrix.test-type }}-${{ matrix.os }}-py${{ matrix.pyversion }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| PYTHON_JULIACALL_THREADS: '2' | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| pyversion: ["3.x", "3.8"] | |
| test-type: ['unit'] | |
| include: | |
| - os: ubuntu-latest | |
| pyversion: '3.x' | |
| test-type: 'integration' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.pyversion }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.pyversion }} | |
| - name: Set up Julia | |
| uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: '1' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov nbval numpy | |
| cp pysrc/juliacall/juliapkg-dev.json pysrc/juliacall/juliapkg.json | |
| pip install -e . | |
| - name: Install integration test dependencies | |
| if: ${{ matrix.test-type == 'integration' }} | |
| run: | | |
| pip install sympy pandas scikit_learn click setuptools | |
| # Note that the `--no-deps` flag is needed for ensuring | |
| # we avoid installing a newer julicall. The initial `pip install` | |
| # is for the non-juliacall dependencies. | |
| pip install --no-deps pysr | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run unit tests | |
| if: ${{ matrix.test-type == 'unit' }} | |
| run: pytest -s --nbval --cov=pysrc ./pytest/ -k "not integration" | |
| - name: Run integration tests | |
| if: ${{ matrix.test-type == 'integration' }} | |
| run: pytest -s ./pytest/integration/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| if: ${{ matrix.test-type == 'unit' }} | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |