v2.0.0: compatibility with PhyloNetworks v0.17; output named tuple (breaking, #21 fix) #64
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| tags: ['*'] | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: only if it is a pull request build. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }} | |
| jobs: | |
| test: | |
| name: Julia ${{ matrix.julia-version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| julia-version: | |
| - '1' | |
| os: | |
| - ubuntu-latest | |
| - macos-latest | |
| - windows-latest | |
| R-version: | |
| - 'release' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: julia-actions/setup-julia@latest | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - uses: julia-actions/cache@v2 | |
| - name: install qpdf on macos | |
| if: matrix.os == 'macos-latest' | |
| run: brew install qpdf | |
| # as of 2024-11-21: qpdf is needed by `--as-cran` for setup-r@v2 | |
| # its automatic installation during setup-r fails sometimes (randomly?) | |
| - name: Install R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| r-version: ${{ matrix.R-version }} | |
| - name: set R lib path to be found by julia RCall | |
| if: matrix.os == 'ubuntu-latest' | |
| run: echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| - uses: julia-actions/julia-buildpkg@v1 | |
| - uses: julia-actions/julia-runtest@v1 | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| file: lcov.info | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| docs: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - run: echo "LD_LIBRARY_PATH=$(R RHOME)/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| - uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: '1' | |
| - uses: julia-actions/cache@v2 | |
| - name: install dependencies | |
| run: | | |
| julia --project=docs -e ' | |
| using Pkg | |
| Pkg.develop(PackageSpec(path=pwd())) | |
| Pkg.instantiate()' | |
| - name: run doctest | |
| run: | | |
| julia --project=docs -e ' | |
| using Documenter: doctest | |
| using PhyloPlots | |
| doctest(PhyloPlots)' | |
| - name: make docs | |
| run: julia --project=docs docs/make.jl | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} |