Skip to content

Commit

Permalink
Update environment
Browse files Browse the repository at this point in the history
  • Loading branch information
@juliohm
juliohm committed Jun 15, 2024
1 parent 769295a commit 470e16c
Show file tree
Hide file tree
Showing 4 changed files with 66 additions and 56 deletions.
6 changes: 3 additions & 3 deletions 04-geoproc.qmd
View file
Original file line number Diff line number Diff line change
Expand Up @@ -433,9 +433,9 @@ tmesh = simplexify(ball)
viz(tmesh, showsegments = true)
```

Various triangulation algorithms are provided such as `Dehn1899` [@Devadoss2011],
and `FIST` [@Held2001]. After the mesh is created, it is possible to `refine` the
elements:
Various triangulation algorithms are provided such as `DehnTriangulation` [@Devadoss2011],
`DelaunayTriangulation` [@Cheng2012] and `HeldTriangulation` [@Held2001]. After the mesh
is created, it is possible to `refine` the elements:

```{julia}
mesh = discretize(Box((0, 0), (1, 1)))
Expand Down
98 changes: 49 additions & 49 deletions Manifest.toml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -118,9 +118,9 @@ version = "7.11.0"

[[deps.ArrayLayouts]]
deps = ["FillArrays", "LinearAlgebra"]
git-tree-sha1 = "29649b61e0313db0a7ad5ecf41210e4e85aea234"
git-tree-sha1 = "420e2853770f50e5306b9d96b5a66f26e7c73bc6"
uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a"
version = "1.9.3"
version = "1.9.4"
weakdeps = ["SparseArrays"]

[deps.ArrayLayouts.extensions]
Expand Down Expand Up @@ -274,9 +274,9 @@ version = "0.6.0"

[[deps.ChainRules]]
deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"]
git-tree-sha1 = "5ec157747036038ec70b250f578362268f0472f1"
git-tree-sha1 = "227985d885b4dbce5e18a96f9326ea1e836e5a03"
uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2"
version = "1.68.0"
version = "1.69.0"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra"]
Expand Down Expand Up @@ -440,9 +440,9 @@ version = "0.6.3"

[[deps.CoordRefSystems]]
deps = ["Random", "Rotations", "StaticArrays", "Unitful", "Zygote"]
git-tree-sha1 = "3531b1bb3efd8dabaf8f2f000bebebbd95de1bdc"
git-tree-sha1 = "338271d93aa07818d5f8d1aa5b94548730a65f6b"
uuid = "b46f11dc-f210-4604-bfba-323c1ec968cb"
version = "0.7.3"
version = "0.7.4"

[[deps.CpuId]]
deps = ["Markdown"]
Expand Down Expand Up @@ -480,9 +480,9 @@ version = "1.6.1"

[[deps.DataScienceTraits]]
deps = ["Dates"]
git-tree-sha1 = "ba239c8cf83cae0103012672cfba8abc6bc898c9"
git-tree-sha1 = "ffea2fbbaa503ad02a13183e2ef24bc1d0522b62"
uuid = "6cb2f572-2d2b-4ba6-bdb3-e710fa044d6c"
version = "0.3.1"
version = "0.3.2"

[deps.DataScienceTraits.extensions]
DataScienceTraitsCategoricalArraysExt = "CategoricalArrays"
Expand Down Expand Up @@ -674,9 +674,9 @@ uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.6.2+0"

[[deps.Extents]]
git-tree-sha1 = "2140cd04483da90b2da7f99b2add0750504fc39c"
git-tree-sha1 = "94997910aca72897524d2237c41eb852153b0f65"
uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910"
version = "0.1.2"
version = "0.1.3"

[[deps.FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
Expand Down Expand Up @@ -842,9 +842,9 @@ version = "6.2.1+6"

[[deps.GPUArrays]]
deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"]
git-tree-sha1 = "38cb19b8a3e600e509dc36a6396ac74266d108c1"
git-tree-sha1 = "c154546e322a9c73364e8a60430b0f79b812d320"
uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7"
version = "10.1.1"
version = "10.2.0"

[[deps.GPUArraysCore]]
deps = ["Adapt"]
Expand All @@ -866,9 +866,9 @@ version = "0.3.2"

[[deps.GeoArtifacts]]
deps = ["GADM", "GeoIO", "GeoStatsImages", "GeoTables", "INMET", "Meshes", "NaturalEarth", "Unitful"]
git-tree-sha1 = "39a8606a0e579a31ba7d2e7a5f96e89e93a7e3c6"
git-tree-sha1 = "1e82638f3f5b9564f868c605e34766ae55247ed2"
uuid = "2a3f1dca-97a5-4513-bfd8-b69f0106a87e"
version = "0.6.1"
version = "0.6.2"

[[deps.GeoFormatTypes]]
git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271"
Expand All @@ -877,9 +877,9 @@ version = "0.4.2"

[[deps.GeoIO]]
deps = ["ArchGDAL", "CSV", "Colors", "CommonDataModel", "FileIO", "Format", "GRIBDatasets", "GeoInterface", "GeoJSON", "GeoParquet", "GeoTables", "GslibIO", "ImageIO", "Meshes", "NCDatasets", "PlyIO", "PrecompileTools", "PrettyTables", "ReadVTK", "Shapefile", "StaticArrays", "Tables", "TransformsBase", "Unitful", "VTKBase", "WriteVTK"]
git-tree-sha1 = "333a0e1f9c5d958f68c503dbd4f5dd9fbf13cd8b"
git-tree-sha1 = "ff9991c2ab560bd20d967c40fa02fde53ee93a2f"
uuid = "f5a160d5-e41d-4189-8b61-d57781c419e3"
version = "1.13.2"
version = "1.13.3"

[[deps.GeoInterface]]
deps = ["Extents"]
Expand Down Expand Up @@ -917,25 +917,25 @@ version = "0.2.1"

[[deps.GeoStats]]
deps = ["CategoricalArrays", "Chain", "CoDa", "CoordRefSystems", "DataScienceTraits", "Dates", "DensityRatioEstimation", "Distances", "Distributions", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoStatsProcesses", "GeoStatsTransforms", "GeoStatsValidation", "GeoTables", "LossFunctions", "Meshes", "Reexport", "Rotations", "Statistics", "StatsLearnModels", "TableTransforms", "Tables", "Unitful"]
git-tree-sha1 = "fda0d63cd79896b53f04f38d04cd08d15bc125eb"
git-tree-sha1 = "c496994aadc8a6e1d3c5f8bd35f1736987e02c4b"
uuid = "dcc97b0b-8ce5-5539-9008-bb190f959ef6"
version = "0.58.0"
version = "0.59.0"

[[deps.GeoStatsBase]]
deps = ["CategoricalArrays", "ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "Distances", "GeoTables", "LinearAlgebra", "Meshes", "Optim", "Rotations", "StaticArrays", "Statistics", "StatsBase", "Tables", "TypedTables", "Unitful"]
git-tree-sha1 = "1cfff5e6093f4039ec3170f95b66a5de20882cb3"
git-tree-sha1 = "927afe82792dd7a6051d327be39d95b4a98558bd"
uuid = "323cb8eb-fbf6-51c0-afd0-f8fba70507b2"
version = "0.44.2"
version = "0.44.3"
weakdeps = ["Makie"]

[deps.GeoStatsBase.extensions]
GeoStatsBaseMakieExt = "Makie"

[[deps.GeoStatsFunctions]]
deps = ["Bessels", "Distances", "GeoTables", "InteractiveUtils", "LinearAlgebra", "Meshes", "NearestNeighbors", "Optim", "Printf", "Random", "Setfield", "Statistics", "Tables", "Transducers", "Unitful"]
git-tree-sha1 = "1cf769756a7453edb1058ff49dee30cfb085765a"
git-tree-sha1 = "ba64b3dc7cdbdebb33a65933f748d69db782a0e7"
uuid = "6771c435-bc22-4842-b0c3-41852a255103"
version = "0.3.3"
version = "0.3.4"
weakdeps = ["Makie"]

[deps.GeoStatsFunctions.extensions]
Expand All @@ -949,15 +949,15 @@ version = "1.1.0"

[[deps.GeoStatsModels]]
deps = ["Combinatorics", "Distances", "Distributions", "GeoStatsFunctions", "GeoTables", "LinearAlgebra", "Meshes", "Statistics", "Tables", "Unitful"]
git-tree-sha1 = "aa5a99e2c363bdb4d15d3ca2b03e73c46833e17d"
git-tree-sha1 = "56f933a16aa9522a4db41102bb19d8aabc9547c0"
uuid = "ad987403-13c5-47b5-afee-0a48f6ac4f12"
version = "0.4.1"
version = "0.4.2"

[[deps.GeoStatsProcesses]]
deps = ["Bessels", "CpuId", "Distances", "Distributed", "Distributions", "FFTW", "GeoStatsBase", "GeoStatsFunctions", "GeoStatsModels", "GeoTables", "LinearAlgebra", "Meshes", "ProgressMeter", "Random", "Statistics", "Tables", "Unitful"]
git-tree-sha1 = "e39bbc0cfd997dc370114462a6b62baf9751e098"
git-tree-sha1 = "293ecd63612032c6d758787b836c25e90318bc6c"
uuid = "aa102bde-5a27-4b0c-b2c1-e7a7dcc4c3e7"
version = "0.6.5"
version = "0.6.7"

[deps.GeoStatsProcesses.extensions]
GeoStatsProcessesImageQuiltingExt = "ImageQuilting"
Expand All @@ -971,21 +971,21 @@ version = "0.6.5"

[[deps.GeoStatsTransforms]]
deps = ["ArnoldiMethod", "CategoricalArrays", "Clustering", "ColumnSelectors", "Combinatorics", "DataScienceTraits", "Distances", "GeoStatsModels", "GeoStatsProcesses", "GeoTables", "LinearAlgebra", "Meshes", "Random", "SparseArrays", "Statistics", "TableDistances", "TableTransforms", "Tables", "Unitful"]
git-tree-sha1 = "6b71f3788a9f86d9267c6ea410a84a0159d1248e"
git-tree-sha1 = "b514357160b0dc9c6c633c29b3c3fe86194c153f"
uuid = "725d9659-360f-4996-9c94-5f19c7e4a8a6"
version = "0.7.2"
version = "0.7.3"

[[deps.GeoStatsValidation]]
deps = ["ColumnSelectors", "DataScienceTraits", "DensityRatioEstimation", "GeoStatsBase", "GeoStatsModels", "GeoStatsTransforms", "GeoTables", "LossFunctions", "Meshes", "StatsLearnModels", "Transducers"]
git-tree-sha1 = "b3e38610daf10bc31d534b9ff64e4c508bdae83f"
git-tree-sha1 = "9a081512dbe9bea8d8e36318adbbc4dbb02bf0db"
uuid = "36f43c0d-3673-45fc-9557-6860e708e7aa"
version = "0.3.2"
version = "0.3.3"

[[deps.GeoTables]]
deps = ["CategoricalArrays", "Colorfy", "ColumnSelectors", "CoordRefSystems", "DataAPI", "DataScienceTraits", "Dates", "Distributions", "Meshes", "PrettyTables", "Random", "Statistics", "Tables", "TransformsBase", "Unitful"]
git-tree-sha1 = "0b26021f390de7b586ae02c54188a8278ecbaeda"
git-tree-sha1 = "65a4236a136ed4a26b7675d0adff82fee57783c6"
uuid = "e502b557-6362-48c1-8219-d30d308dcdb0"
version = "1.21.3"
version = "1.21.4"
weakdeps = ["Makie", "TableTransforms"]

[deps.GeoTables.extensions]
Expand Down Expand Up @@ -1041,9 +1041,9 @@ version = "1.0.2"

[[deps.GslibIO]]
deps = ["DelimitedFiles", "GeoTables", "Meshes", "Printf", "Tables", "Unitful"]
git-tree-sha1 = "c35df70b9997fcfad0cbc08a12f5f66f4ae0c336"
git-tree-sha1 = "f931859fa35649b884fb63f701c3587ee3df69b3"
uuid = "4610876b-9b01-57c8-9ad9-06315f1a66a5"
version = "1.5.1"
version = "1.5.2"

[[deps.HDF5_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "LazyArtifacts", "LibCURL_jll", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "OpenSSL_jll", "TOML", "Zlib_jll", "libaec_jll"]
Expand Down Expand Up @@ -1177,9 +1177,9 @@ weakdeps = ["Unitful"]

[[deps.IntervalArithmetic]]
deps = ["CRlibm_jll", "MacroTools", "RoundingEmulator"]
git-tree-sha1 = "90709228dc114e599a2b62b7d23482a4f50938ee"
git-tree-sha1 = "433b0bb201cd76cb087b017e49244f10394ebe9c"
uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253"
version = "0.22.13"
version = "0.22.14"
weakdeps = ["DiffRules", "ForwardDiff", "RecipesBase"]

[deps.IntervalArithmetic.extensions]
Expand Down Expand Up @@ -1581,10 +1581,10 @@ uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e"
version = "0.3.2"

[[deps.Meshes]]
deps = ["Bessels", "CircularArrays", "Colorfy", "CoordRefSystems", "Distances", "LinearAlgebra", "NearestNeighbors", "Random", "Rotations", "SparseArrays", "StaticArrays", "StatsBase", "Transducers", "TransformsBase", "Unitful"]
git-tree-sha1 = "b5f09891980b53473e665c4420df703a22217c37"
deps = ["Bessels", "CircularArrays", "Colorfy", "CoordRefSystems", "DelaunayTriangulation", "Distances", "LinearAlgebra", "NearestNeighbors", "Random", "Rotations", "SparseArrays", "StaticArrays", "StatsBase", "Transducers", "TransformsBase", "Unitful"]
git-tree-sha1 = "47776e90515339969b562e357a7bf9fa04da831c"
uuid = "eacbb407-ea5a-433e-ab97-5258b1ca43fa"
version = "0.44.0"
version = "0.45.0"
weakdeps = ["Makie"]

[deps.Meshes.extensions]
Expand Down Expand Up @@ -1652,9 +1652,9 @@ version = "0.1.0"

[[deps.NearestNeighbors]]
deps = ["Distances", "StaticArrays"]
git-tree-sha1 = "ded64ff6d4fdd1cb68dfcbb818c69e144a5b2e4c"
git-tree-sha1 = "e4a9d37f0ee694da969def1f0dd4654642dfb51c"
uuid = "b8a86587-4115-5ab1-83bc-aa920d37bbce"
version = "0.4.16"
version = "0.4.17"

[[deps.NelderMead]]
git-tree-sha1 = "25abc2f9b1c752e69229f37909461befa7c1f85d"
Expand Down Expand Up @@ -1745,9 +1745,9 @@ version = "1.4.3"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "3da7367955dcc5c54c1ba4d402ccdc09a1a3e046"
git-tree-sha1 = "a028ee3cb5641cccc4c24e90c36b0a4f7707bdf5"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "3.0.13+1"
version = "3.0.14+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -2316,9 +2316,9 @@ version = "1.0.1"

[[deps.TableTransforms]]
deps = ["AbstractTrees", "CategoricalArrays", "CoDa", "ColumnSelectors", "DataScienceTraits", "Distributions", "InverseFunctions", "LinearAlgebra", "NelderMead", "PrettyTables", "Random", "Statistics", "StatsBase", "Tables", "Transducers", "TransformsBase", "Unitful"]
git-tree-sha1 = "dae558bb3b3853db52d15750834af9e47e8fea6e"
git-tree-sha1 = "2404c9860c305b86deb818564ef7f4e732837626"
uuid = "0d432bfd-3ee1-4ac1-886a-39f05cc69a3e"
version = "1.31.1"
version = "1.31.2"

[[deps.Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"]
Expand Down Expand Up @@ -2390,9 +2390,9 @@ version = "0.4.82"

[[deps.TransformsBase]]
deps = ["AbstractTrees"]
git-tree-sha1 = "484610e9b25a45f015f3e695c6d307e91883f2d3"
git-tree-sha1 = "ec6abfb538d9df83cd0535537df90510fa702b74"
uuid = "28dd2a49-a57a-4bfb-84ca-1a49db9b96b8"
version = "1.4.1"
version = "1.5.1"

[[deps.TriplotBase]]
git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b"
Expand Down Expand Up @@ -2626,9 +2626,9 @@ version = "2.0.2+0"

[[deps.libgeotiff_jll]]
deps = ["Artifacts", "JLLWrappers", "LibCURL_jll", "Libdl", "Libtiff_jll", "PROJ_jll"]
git-tree-sha1 = "725d54dbc56fd1a21ca4917affe2197206b39d3e"
git-tree-sha1 = "c48ca6e850d4190dcb8e0ccd220380c2bc678403"
uuid = "06c338fa-64ff-565b-ac2f-249532af990e"
version = "100.701.100+1"
version = "100.701.300+0"

[[deps.libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"]
Expand Down
6 changes: 3 additions & 3 deletions preface.qmd
View file
Original file line number Diff line number Diff line change
Expand Up @@ -115,13 +115,13 @@ using Pkg
pkg"activate @GDSJL"

# install framework
pkg"add GeoStats@0.58.0"
pkg"add GeoStats@0.59.0"

# install IO module
pkg"add [email protected].2"
pkg"add [email protected].3"

# install artifacts
pkg"add [email protected].1"
pkg"add [email protected].2"

# install viz modules
pkg"add [email protected]"
Expand Down
12 changes: 11 additions & 1 deletion references.bib
View file
Original file line number Diff line number Diff line change
Expand Up @@ -452,4 +452,14 @@ @article{Held2001
author = {M. Held},
title = {{FIST}: Fast Industrial-Strength Triangulation of Polygons},
journal = {Algorithmica}
}
}

@book{Cheng2012,
title = {Delaunay Mesh Generation},
author = {Siu-Wing Cheng and Tamal K. Dey and Jonathan Shewchuk},
publisher = {Chapman and Hall/CRC},
isbn = {978-1584887300},
url = {https://people.eecs.berkeley.edu/~jrs/meshbook.html},
year = {2012},
month = {dec},
}

0 comments on commit 470e16c

Please sign in to comment.