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ResumableFunctions v0.6.6 StackOverflow with julia-1.10 #80

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marcom opened this issue Jan 2, 2024 · 8 comments · Fixed by #81 or #88
Closed

ResumableFunctions v0.6.6 StackOverflow with julia-1.10 #80

marcom opened this issue Jan 2, 2024 · 8 comments · Fixed by #81 or #88

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@marcom
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marcom commented Jan 2, 2024 •
edited
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My package https://github.com/marcom/FoldRNA.jl/ uses ResumableFunctions for the function allstruct.

https://github.com/marcom/FoldRNA.jl/blob/main/src/allstruct.jl

On julia-1.10 and with ResumableFunctions 0.6.6, I get a StackOverflow with a neverending(?) stacktrace from julia internals. Only kill -9 seems to stop the process in reasonable time.

With ResumableFunctions v0.6.5 everything works as expected, so I am releasing a new version of FoldRNA now keeping ResumableFunctions at v0.6.5 in compat.

To reproduce:

# ensure ResumableFunctions compat is set to =0.6.6
using FoldRNA
collect(allstruct(10))
Output for julia-1.10, ResumableFunctions v0.6.6 
Internal error: encountered unexpected error during compilation of show:
StackOverflowError()
emit_expr at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:5421
emit_call at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:4569
emit_expr at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:5511
emit_ssaval_assign at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:5101
emit_stmtpos at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:5335 [inlined]
emit_function at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:8380
jl_emit_code at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:8715
jl_emit_codeinst at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/codegen.cpp:8789
_jl_compile_codeinst at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/jitlayers.cpp:221
jl_generate_fptr_impl at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/jitlayers.cpp:518
jl_compile_method_internal at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2480 [inlined]
jl_compile_method_internal at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2368
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2886 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
print at ./boot.jl:584
jfptr_print_25803.1 at /home/mcm/.julia/juliaup/julia-1.10.0+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
println at ./boot.jl:587
println at ./boot.jl:591
jfptr_println_25813.1 at /home/mcm/.julia/juliaup/julia-1.10.0+0.x64.linux.gnu/lib/julia/sys.so (unknown line)
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
fsmi_generator at /home/mcm/.julia/packages/ResumableFunctions/kJXjK/src/utils.jl:153
unknown function (ip: 0x7f905211789c)
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_call_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:540
ijl_code_for_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:593
get_staged at ./compiler/utilities.jl:123
retrieve_code_info at ./compiler/utilities.jl:135 [inlined]
InferenceState at ./compiler/inferencestate.jl:430
typeinf_edge at ./compiler/typeinfer.jl:920
abstract_call_method at ./compiler/abstractinterpretation.jl:629
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95
abstract_call_known at ./compiler/abstractinterpretation.jl:2083
abstract_call at ./compiler/abstractinterpretation.jl:2165
abstract_call at ./compiler/abstractinterpretation.jl:2158
abstract_call at ./compiler/abstractinterpretation.jl:2350
abstract_eval_call at ./compiler/abstractinterpretation.jl:2366
abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2376
abstract_eval_statement at ./compiler/abstractinterpretation.jl:2620
abstract_eval_basic_statement at ./compiler/abstractinterpretation.jl:2885
typeinf_local at ./compiler/abstractinterpretation.jl:3094
typeinf_nocycle at ./compiler/abstractinterpretation.jl:3182
_typeinf at ./compiler/typeinfer.jl:247
typeinf at ./compiler/typeinfer.jl:216
typeinf_edge at ./compiler/typeinfer.jl:930
abstract_call_method at ./compiler/abstractinterpretation.jl:629
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95
abstract_call_known at ./compiler/abstractinterpretation.jl:2083
abstract_call at ./compiler/abstractinterpretation.jl:2165
abstract_call at ./compiler/abstractinterpretation.jl:2158
abstract_call at ./compiler/abstractinterpretation.jl:2350
abstract_eval_call at ./compiler/abstractinterpretation.jl:2366
abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2376
abstract_eval_statement at ./compiler/abstractinterpretation.jl:2620
abstract_eval_basic_statement at ./compiler/abstractinterpretation.jl:2885
typeinf_local at ./compiler/abstractinterpretation.jl:3094
typeinf_nocycle at ./compiler/abstractinterpretation.jl:3182
_typeinf at ./compiler/typeinfer.jl:247
typeinf at ./compiler/typeinfer.jl:216
typeinf_frame at ./compiler/typeinfer.jl:995
#code_typed_by_type#11 at /home/mcm/.julia/packages/ResumableFunctions/kJXjK/src/utils.jl:139
code_typed_by_type at /home/mcm/.julia/packages/ResumableFunctions/kJXjK/src/utils.jl:131 [inlined]
fsmi_generator at /home/mcm/.julia/packages/ResumableFunctions/kJXjK/src/utils.jl:151
unknown function (ip: 0x7f905211789c)
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_call_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:540
ijl_code_for_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:593
get_staged at ./compiler/utilities.jl:123
retrieve_code_info at ./compiler/utilities.jl:135 [inlined]
InferenceState at ./compiler/inferencestate.jl:430
typeinf_edge at ./compiler/typeinfer.jl:920
abstract_call_method at ./compiler/abstractinterpretation.jl:629
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95
abstract_call_known at ./compiler/abstractinterpretation.jl:2083
abstract_call at ./compiler/abstractinterpretation.jl:2165
abstract_call at ./compiler/abstractinterpretation.jl:2158
abstract_call at ./compiler/abstractinterpretation.jl:2350
abstract_eval_call at ./compiler/abstractinterpretation.jl:2366
abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2376
[... continues seemingly endlessly ...]
marcom added a commit to marcom/FoldRNA.jl that referenced this issue Jan 2, 2024
@marcom
Keep ResumableFunctions at v0.6.5 for now to avoid stack overflow on …
51a5290 
…julia-1.10

`allstruct` has a stack overflow (probably in type inference) from
inside julia on julia-1.10 with ResumableFunctions v0.6.5.

To reproduce:
```
using FoldRNA
collect(allstruct(10))
```
Upstream issue:

JuliaDynamics/ResumableFunctions.jl#80
@marcom marcom mentioned this issue Jan 2, 2024
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@gerlero
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gerlero commented Jan 2, 2024

Interesting, thanks! I've been able to reproduce the bug as presented here. The changes in #76 are likely to blame here, so I'm pinging @pepijndevos @Krastanov @maleadt @aviatesk for help.

I want to note that my package Fronts.jl also uses ResumableFunctions, but doesn't seem to be affected by this and is working fine with 0.6.6 on Julia 1.10. So, for some reason this is affecting your use case but not mine.

In the meantime and if possible, may I ask that you try to narrow down the part of the code that causes the problem as much as you can? FWIW this is the diff for #76.

@marcom
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marcom commented Jan 2, 2024 •
edited by Krastanov
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Here is a slightly smaller and self-contained example of the error.

With ResumableFunctions v0.6.6, this works on julia-1.9 and fails on julia-1.10.

FWIW, on julia-1.10, inserting a typo into rf! (e.g. changing a[i] = 0 to b[i] = 0) still triggers a stack overflow, whereas julia-1.9 will throw an error about b not being defined.

import Pkg
using ResumableFunctions

println("ResumableFunctions $(Pkg.installed()["ResumableFunctions"])")
println()

@resumable function rf!(a::Vector{Int}, i::Integer, n::Integer) :: Vector{Int}
    if i > n
        @yield a
	return
    end
    a[i] = 0
    for _ in rf!(a, i+1, n)
        @yield a
    end
    for k = i+1:n
        a[i] = k
	a[k] = i
        for _ in rf!(a, i+1, k-1)
            for _ in rf!(a, k+1, n)
		@yield a
            end
	end
    end
end

function this_fails()
    n = 3
    a = zeros(Int, n)
    for _ in rf!(a, 1, n)
        println(a)
    end
end

this_fails()

Edit (by Stefan @Krastanov):

Just to add the stack trace: it is a (seemingly infinite) printout of errors coming from C

InferenceState at ./compiler/inferencestate.jl:430
typeinf_edge at ./compiler/typeinfer.jl:920
abstract_call_method at ./compiler/abstractinterpretation.jl:629
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95
abstract_call_known at ./compiler/abstractinterpretation.jl:2083
abstract_call at ./compiler/abstractinterpretation.jl:2165
abstract_call at ./compiler/abstractinterpretation.jl:2158
abstract_call at ./compiler/abstractinterpretation.jl:2350
abstract_eval_call at ./compiler/abstractinterpretation.jl:2366
abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2376
abstract_eval_statement at ./compiler/abstractinterpretation.jl:2620
abstract_eval_basic_statement at ./compiler/abstractinterpretation.jl:2885
typeinf_local at ./compiler/abstractinterpretation.jl:3094
typeinf_nocycle at ./compiler/abstractinterpretation.jl:3182
_typeinf at ./compiler/typeinfer.jl:247
typeinf at ./compiler/typeinfer.jl:216
typeinf_edge at ./compiler/typeinfer.jl:930
abstract_call_method at ./compiler/abstractinterpretation.jl:629
abstract_call_gf_by_type at ./compiler/abstractinterpretation.jl:95
abstract_call_known at ./compiler/abstractinterpretation.jl:2083
abstract_call at ./compiler/abstractinterpretation.jl:2165
abstract_call at ./compiler/abstractinterpretation.jl:2158
abstract_call at ./compiler/abstractinterpretation.jl:2350
abstract_eval_call at ./compiler/abstractinterpretation.jl:2366
abstract_eval_statement_expr at ./compiler/abstractinterpretation.jl:2376
abstract_eval_statement at ./compiler/abstractinterpretation.jl:2620
abstract_eval_basic_statement at ./compiler/abstractinterpretation.jl:2885
typeinf_local at ./compiler/abstractinterpretation.jl:3094
typeinf_nocycle at ./compiler/abstractinterpretation.jl:3182
_typeinf at ./compiler/typeinfer.jl:247
typeinf at ./compiler/typeinfer.jl:216
typeinf_frame at ./compiler/typeinfer.jl:995
#code_typed_by_type#11 at /home/stefan/Documents/ScratchSpace/quantumjulia/ResumableFunctions.jl/src/utils.jl:139
code_typed_by_type at /home/stefan/Documents/ScratchSpace/quantumjulia/ResumableFunctions.jl/src/utils.jl:131 [inlined]
fsmi_generator at /home/stefan/Documents/ScratchSpace/quantumjulia/ResumableFunctions.jl/src/utils.jl:151
unknown function (ip: 0x7f85e1b4e15c)
_jl_invoke at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:2894 [inlined]
ijl_apply_generic at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/gf.c:3076
jl_call_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:540
ijl_code_for_staged at /cache/build/builder-amdci4-6/julialang/julia-release-1-dot-10/src/method.c:593
get_staged at ./compiler/utilities.jl:123
retrieve_code_info at ./compiler/utilities.jl:135 [inlined]

and at a ctrl+C it prints

^CInternal error: stack overflow in type inference of map(ResumableFunctions.var"#12#13"{Base.Dict{Symbol, Any}}, NTuple{12, Symbol}).
This might be caused by recursion over very long tuples or argument lists.
^CInternal error: stack overflow in type inference of setproperty!(Core.CodeInfo, Symbol, Array{Core.MethodInstance, 1}).
This might be caused by recursion over very long tuples or argument lists.
Internal error: stack overflow in type inference of append!(Array{Any, 1}, Array{Core.MethodInstance, 1}).
This might be caused by recursion over very long tuples or argument lists.
^CInternal error: stack overflow in type inference of unsafe_copyto!(Array{Any, 1}, Int64, Array{Core.MethodInstance, 1}, Int64, Int64).
This might be caused by recursion over very long tuples or argument lists.

@Krastanov
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Indeed, this is probably due to #76 -- It was a pretty big change to some of the low level internals and it is only running the changes on 1.10 and newer.

@pepijndevos , is this something you can tackle? If you do not have the time, we might need to revert #76 for the time being (it is an incredible improvement, but I personally do not have the bandwidth to support it in the near term).

I have another case of issues introduced by #76 here, but I do not have a MWE for it yet (it is probably unrelated)

@marcom
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marcom commented Jan 2, 2024 •
edited
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A smaller failing example (works on julia-1.9, stack overflow on julia-1.10):

import Pkg
using ResumableFunctions

println("ResumableFunctions $(Pkg.installed()["ResumableFunctions"])")
println()

@resumable function rf!(a::Vector{Int}, i::Integer, n::Integer) :: Vector{Int}
    if i > n
        @yield a
        return
    end
    for _ in rf!(a, i+1, n)
        @yield a
    end
end

function this_fails()
    n = 3
    a = zeros(Int, n)
    for _ in rf!(a, 1, n)
        println(a)
    end
end

this_fails()

This time the stack trace terminates (note the very long lines in [2] and [3]):

Internal error: stack overflow in type inference of setproperty!(Core.CodeInfo, Symbol, UInt64).
This might be caused by recursion over very long tuples or argument lists.
Internal error: stack overflow in type inference of setproperty!(Core.CodeInfo, Symbol, UInt64).
This might be caused by recursion over very long tuples or argument lists.
Internal error: stack overflow in type inference of setproperty!(Core.CodeInfo, Symbol, Array{Core.MethodInstance, 1}).
This might be caused by recursion over very long tuples or argument lists.
StackOverflowError()
StackOverflowError()
StackOverflowError()
ERROR: LoadError: UndefRefError: access to undefined reference
Stacktrace:
 [1] getproperty
   @ ./Base.jl:37 [inlined]
 [2] (::var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, var"##rf!_FSMI#226"{Vector{Int64}, Int64, Nothing, 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   @ Main ~/.julia/packages/ResumableFunctions/kJXjK/src/macro.jl:81
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Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64}, Int64})(_arg::Nothing)
   @ Main ~/.julia/packages/ResumableFunctions/kJXjK/src/macro.jl:119 [inlined]
 [4] iterate (repeats 2 times)
   @ ~/.julia/packages/ResumableFunctions/kJXjK/src/types.jl:24 [inlined]
 [5] this_fails()
   @ Main ~/src/FoldRNA.jl/error2.jl:20
 [6] top-level scope
   @ ~/src/FoldRNA.jl/error2.jl:25
in expression starting at ~/src/FoldRNA.jl/error2.jl:25

@pepijndevos
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pepijndevos commented Jan 2, 2024 via email

@gerlero
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gerlero commented Jan 2, 2024

I'll add it to my queue to look at but probably not this week.

@pepijndevos Thanks for giving us a rough timeframe, but this is breaking downstream users now, so I agree with @Krastanov and will recommend an immediate revert. You're welcome to open a new PR with these same improvements and this bug fixed.

@gerlero gerlero mentioned this issue Jan 2, 2024
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@Krastanov
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Thanks for looking into this Pepijn! If you have any guidance on how to start, I would be happy to try to pick up some of the slack later this month.

@Krastanov Krastanov mentioned this issue Jan 2, 2024
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@gerlero
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gerlero commented Jan 2, 2024

Fixed (#73 reverted) in v0.6.7.

Hope @pepijndevos can re-submit his improvements in a new PR soon.

Krastanov added a commit that referenced this issue Feb 6, 2024
@Krastanov
tests for issues #80 (inference stack overflow for recursive resumabl…
9ccef15 
…e functions) and #86 (repeated variable names)
Krastanov added a commit that referenced this issue Feb 6, 2024
@Krastanov
tests for issues #80 (inference stack overflow for recursive resumabl…
30cd94a 
…e functions) and #86 (repeated variable names)
@Krastanov Krastanov mentioned this issue Feb 6, 2024
Merged
Krastanov added a commit that referenced this issue Feb 12, 2024
@Krastanov
tests for issues #80 (inference stack overflow for recursive resumabl…
dc9f2fc 
…e functions) and #86 (repeated variable names)
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@marcom @pepijndevos @Krastanov @gerlero