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JosefineRuder · Oct 19, 2020 · f635cd9 · f635cd9
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 <h1 class="title toc-ignore">Exercise 6</h1>
 <h4 class="author">Hubert Rehrauer</h4>
-<h4 class="date">21 10 2019</h4>
+<h4 class="date">19 10 2020</h4>
 
 </div>
 
 
 <div id="comparison-of-expression-estimates" class="section level2">
 <h2>Comparison of Expression Estimates</h2>
 <p>The data set consists for 3 Normal samples and 3 Treated samples with 2.5 Mio reads each. The reads are simulated to come from genes on the human chromosome 1.</p>
-<p>The expression values from featureCounts were created with: We use the library subread to generate the counts</p>
+<p>The expression values from featureCounts were created with: We use the library <code>Rsubread</code> to generate the counts</p>
 <pre class="r"><code>library(Rsubread)
 countResult1 = featureCounts(..., strandSpecific=0,
                                  GTF.featureType=&quot;exon&quot;, GTF.attrType=&quot;gene_id&quot;, useMetaFeatures=TRUE,