Merged

[WIP] container-level validation, add docs#19
d-v-b merged 70 commits intomainfrom use_pydantic_zarr

[WIP] container-level validation, add docs#19

Merged

d-v-b merged 70 commits intomainfrom use_pydantic_zarr

Mar 27, 2024

+4,663-2,143

Commits on Jun 6, 2023

feat: use pydantic-zarr for representing multiscale groups
d-v-b
committedJun 6, 2023
chore: update type signature of version in latest multiscale, although the version is still untyped. also use conlist for axes.
d-v-b
committedJun 6, 2023

Commits on Nov 8, 2023

feat: update to pydantic 2 / pydantic-zarr 0.5.2
d-v-b
committedNov 8, 2023
feat: pointless renaming
d-v-b
committedNov 8, 2023

Commits on Dec 20, 2023

feat: big refactor: split validators into separate functions, rename transforms, etc
d-v-b
committedDec 20, 2023

Commits on Jan 1, 2024

Commits on Jan 9, 2024

feat: use a tighter module-local name convention for specialized GroupSpec instances, and expand ImageLabel metadata
d-v-b
committedJan 9, 2024

Commits on Feb 4, 2024

begin adding docs and convenience function for multiscale creation
d-v-b
committedFeb 4, 2024

Commits on Feb 12, 2024

docs: add mkdocs.yml
d-v-b
committedFeb 12, 2024

Commits on Feb 15, 2024

merge branch "use_pydantic_zarr" from origin
d-v-b
committedFeb 15, 2024
tighten some names and type annotations
d-v-b
committedFeb 15, 2024
start handling deeper arrays
d-v-b
committedFeb 15, 2024

Commits on Feb 20, 2024

flattening and unflattening routines for GroupSpec
d-v-b
committedFeb 20, 2024

Commits on Mar 3, 2024

fix: use tuple instead of list for transforms; defer to pydantic-zarr for flattening / unflattening; handle arrays in subgroups when validating multiscale metadata
d-v-b
committedMar 3, 2024
chore: add gha
d-v-b
committedMar 3, 2024
feat: use pydantic-zarr for representing multiscale groups
d-v-b
committedMar 3, 2024
chore: update type signature of version in latest multiscale, although the version is still untyped. also use conlist for axes.
d-v-b
committedMar 3, 2024
feat: update to pydantic 2 / pydantic-zarr 0.5.2
d-v-b
committedMar 3, 2024
feat: pointless renaming
d-v-b
committedMar 3, 2024
feat: big refactor: split validators into separate functions, rename transforms, etc
d-v-b
committedMar 3, 2024
feat: use python 3.10 as baseline, refactor the test suite a bit, use inheritance more for the latest classes, start looking at coverage and adjusting things accordingly
d-v-b
committedMar 3, 2024
lint
d-v-b
committedMar 3, 2024
feat: use a tighter module-local name convention for specialized GroupSpec instances, and expand ImageLabel metadata
d-v-b
committedMar 3, 2024
begin adding docs and convenience function for multiscale creation
d-v-b
committedMar 3, 2024
docs: add mkdocs.yml
d-v-b
committedMar 3, 2024
merge branch "use_pydantic_zarr" from origin
d-v-b
committedMar 3, 2024
tighten some names and type annotations
d-v-b
committedMar 3, 2024
start handling deeper arrays
d-v-b
committedMar 3, 2024
flattening and unflattening routines for GroupSpec
d-v-b
committedMar 3, 2024
fix: use tuple instead of list for transforms; defer to pydantic-zarr for flattening / unflattening; handle arrays in subgroups when validating multiscale metadata
d-v-b
committedMar 3, 2024
chore: add gha
d-v-b
committedMar 3, 2024
chore: fix broken tests
d-v-b
committedMar 3, 2024
Merge branch 'use_pydantic_zarr' of https://github.com/JaneliaSciComp/pydantic-ome-ngff into use_pydantic_zarr
d-v-b
committedMar 3, 2024
remove redundant ci
d-v-b
committedMar 3, 2024

Commits on Mar 4, 2024

lint
d-v-b
committedMar 4, 2024
ci: increment the python version used for linting
d-v-b
committedMar 4, 2024
chore: use typing_extensions for self import
d-v-b
committedMar 4, 2024
remove extra script
d-v-b
committedMar 4, 2024
fix: remove support for group_scale and group_translation in Group.from_arrays()
d-v-b
committedMar 4, 2024

Commits on Mar 6, 2024

Update pyproject.toml
d-v-b
authoredMar 6, 2024
Update poetry.lock
d-v-b
committedMar 6, 2024

Commits on Mar 11, 2024

add doctests, set minimum python version to 3.9
d-v-b
committedMar 11, 2024
handle numpy arrays as arguments to and transforms
d-v-b
committedMar 11, 2024
dont cast to list
d-v-b
committedMar 11, 2024
add multiscale creation example
d-v-b
committedMar 11, 2024
add chunking to group creation example
d-v-b
committedMar 11, 2024
simplify array creation in example, and remove incorrect translation
d-v-b
committedMar 11, 2024

Commits on Mar 12, 2024

chore: depluralize module names
d-v-b
committedMar 12, 2024
docs: update docs
d-v-b
committedMar 12, 2024
docs: more docs
d-v-b
committedMar 12, 2024
test: remove unnecessary transform validation logic
d-v-b
committedMar 12, 2024

Commits on Mar 20, 2024

docs: add links, remove unused var from examples
d-v-b
committedMar 20, 2024
bump deps, using latest version of pydantic-zarr
d-v-b
committedMar 20, 2024
add chunks keyword argument to from_arrays, and corresponding normalization function
d-v-b
committedMar 20, 2024
add from __future__ imports, and use Union instead of |
d-v-b
committedMar 20, 2024
add chunks to from_array tests
d-v-b
committedMar 20, 2024
chore: update lockfile
d-v-b
committedMar 20, 2024
chore: add python 3.9 to ci
d-v-b
committedMar 20, 2024
docs: fix example
d-v-b
committedMar 20, 2024
feat: expand function signature of from_arrays to include compressor, order, fill value
d-v-b
committedMar 20, 2024
feat: use tuples instead of lists
d-v-b
committedMar 20, 2024
update tests for tuples
d-v-b
committedMar 20, 2024
add validation example
d-v-b
committedMar 20, 2024
docs
d-v-b
committedMar 20, 2024
docstring
d-v-b
committedMar 20, 2024

Commits on Mar 21, 2024

more text about
d-v-b
committedMar 21, 2024

Commits on Mar 27, 2024

chore: bump deps
d-v-b
committedMar 27, 2024
test: parametrize test_coordinate_transforms_invalid_ndims
d-v-b
committedMar 27, 2024
test: shorten the names of some test functions
d-v-b
committedMar 27, 2024