auto copy all data

src/Nipype/Notebooks/nipype_spm_preproc.ipynb

@@ -9,7 +9,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 1,
+   "execution_count": 2,
    "metadata": {},
    "outputs": [],
    "source": [

src/workflowsetup.py

@@ -0,0 +1,71 @@
+
+import urllib.request
+import os
+import shutil
+import os
+
+
+def download_data(url, path):
+    urllib.request.urlretrieve(url, path)
+
+base_dir = os.path.join(os.environ['HOME'], 'spmbasics/data/')
+# downloading block design data
+block_url = 'https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.bids.zip'
+
+block_path = os.path.join(base_dir, 'MoAEpilot.bids.zip')
+
+face_rep_url = 'https://www.fil.ion.ucl.ac.uk/spm/download/data/face_rep/face_rep.zip'
+face_rep_path = os.path.join(base_dir, 'face_rep.zip')
+
+download_data(block_url, block_path)
+
+shutil.unpack_archive(block_path, base_dir)
+# downloading event related design dataset
+
+download_data(face_rep_url, face_rep_path)
+
+shutil.unpack_archive(face_rep_path, base_dir)
+
+# Copying block design data to the output directory
+
+block_source = os.path.join(base_dir, 'MoAEpilot')
+os.makedirs(os.path.join(base_dir, 'output'))
+output_dir = os.path.join(base_dir, 'output')
+_, blockname = os.path.split(block_source)
+block_gui = blockname + '_gui'
+batchname = blockname + '_batch'
+scriptname = blockname + '_script'
+os.makedirs(os.path.join(output_dir, batchname))
+os.makedirs(os.path.join(output_dir, scriptname))
+os.makedirs(os.path.join(output_dir, block_gui))
+
+block_dest0 = os.path.join(output_dir, block_gui)
+block_dest1 = os.path.join(output_dir, batchname)
+block_dest2 = os.path.join(output_dir, scriptname)
+
+def copytree2(source, dest):
+  shutil.copytree(source, dest, symlinks=False, ignore=None, copy_function=shutil.copy2,  dirs_exist_ok=True)
+
+copytree2(block_source, block_dest1)
+copytree2(block_source, block_dest2)
+copytree2(block_source, block_dest0)
+
+# Copying event related design data to the output directory
+
+event_source = os.path.join(base_dir, 'face_rep')
+_, eventname = os.path.split(event_source)
+event_gui = eventname + '_gui'
+event_batch = eventname + '_batch'
+event_script = eventname + '_script'
+os.makedirs(os.path.join(output_dir, event_batch))
+os.makedirs(os.path.join(output_dir, event_script))
+os.makedirs(os.path.join(output_dir, event_gui))
+
+event_dest0 = os.path.join(output_dir, event_gui)
+event_dest1 = os.path.join(output_dir, event_batch)
+event_dest2 = os.path.join(output_dir, event_script)
+
+copytree2(event_source, event_dest1)
+copytree2(event_source, event_dest2)
+copytree2(event_source, event_dest0)
+