[CI] from now on, unit_test workflow must run on self hosted runner

Inria-Empenn · Aug 29, 2023 · 6640ca3 · 6640ca3
1 parent 69fd60b
commit 6640ca3
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Showing 2 changed files with 7 additions and 16 deletions.
diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
@@ -27,24 +27,15 @@ jobs:
   pytest:
 
     # Define the runner for this job
-    runs-on: ubuntu-latest
+    runs-on: self-hosted
 
     # Steps that define the job
     steps:
     - name: Checkout repository
       uses: actions/checkout@v3
 
-    - name: Set up Python 3.9
-      uses: actions/setup-python@v3
-      with:
-        python-version: 3.9
-
-    - uses: actions/cache@v3
-      with:
-        path: ~/.cache/pip
-        key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}
-        restore-keys: |
-          ${{ runner.os }}-pip-
+    - name: Load configuration for self-hosted runner
+      run: cp /home/neuro/local_testing_config.toml narps_open/utils/configuration/testing_config.toml
 
     - name: Install dependencies
       run: |

diff --git a/narps_open/pipelines/team_T54A.py b/narps_open/pipelines/team_T54A.py
@@ -228,7 +228,7 @@ def get_run_level_analysis(self):
             name = 'skullstrip')
 
         # Smoothing
-        smooth = Node(IsotropicSmooth(fwhm = self.fwhm),
+        smooth = Node(IsotropicSmooth(fwhm = self.fwhm), # TODO : Previously set to 6 mm ?
             name = 'smooth')
 
         # Function node get_subject_infos - get subject specific condition information
@@ -254,8 +254,8 @@ def get_run_level_analysis(self):
         parameters = Node(Function(
             function = self.get_parameters_file,
             input_names = ['filepath', 'subject_id', 'run_id', 'working_dir'],
-            output_names=['parameters_file']),
-            name='parameters')
+            output_names = ['parameters_file']),
+            name = 'parameters')
         parameters.inputs.working_dir = self.directories.working_dir
 
         # First temporal derivatives of the two regressors were also used,
@@ -753,7 +753,7 @@ def get_group_level_outputs(self):
             for parameter_values in parameter_sets]
 
         # Handle groupComp
-        files : [
+        files = [
             'randomise_tfce_corrp_tstat1.nii.gz',
             'randomise_tstat1.nii.gz',
             'zstat1.nii.gz',