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Improve help display
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bishesh committed Mar 26, 2017
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6 changes: 3 additions & 3 deletions src/PetscAdLemMain.cxx
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Expand Up @@ -29,7 +29,7 @@ static char help[] = "Solves AdLem model. Equations solved: "
" --------------------------------\n"
" k = 0 in brain tissue. Value of k is either 0 in CSF or non-zero, can be chosen by the user.\n"
" Choosing non-zero k relaxes the Incompressibility Constraint (IC) in CSF.\n"
"Arguments: \n"
"Arguments: \n\n"
"-muFile : Lame parameter mu image file. Use this if mu is spatially varying\n"
" If piecewise constant in tissue and in CSF, use -parameters instead.\n\n"
"-parameters : Lame parameters separated by comma WITHOUT SPACE in the "
Expand All @@ -40,8 +40,8 @@ static char help[] = "Solves AdLem model. Equations solved: "
"with the way most atrophy measurement tools compute divergence from the transformation field in image space. Thus use this "
"option if you want the divergence of the velocity field obtained from the model has to exactly match the divergenc/atrophy "
"you prescribe when computed with following stencil: (vx(i+1,j)-vx(i-1,j))/(2*hx) + (vy(i,j+1)-vy(i,j-1)/(2*hy)). \n"
"If NOT provided, the output velocity field will have divergence compatible to the one computed internally in the staggered grid."
"--no_lame_in_rhs : If given, momentum equation will be mu div(u) + grad(p) = grad(a). So lambda is irrelevant and mu only in LHS."
"If NOT provided, the output velocity field will have divergence compatible to the one computed internally in the staggered grid.\n\n"
"--no_lame_in_rhs : If given, momentum equation will be mu div(u) + grad(p) = grad(a). So lambda is irrelevant and mu only in LHS.\n\n"
"-boundary_condition : Possible values: dirichlet_at_walls dirichlet_at_skull.\n\n"
"--relax_ic_in_csf : If given, relaxes IC, that is non-zero k. If not given, modifies"
"\natrophy map distributing uniform volume change in CSF to compensate global volume change in"
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