Add step to publish apptainer image

Imageomics · Aug 27, 2024 · 2fee9a3 · 2fee9a3
1 parent d005716
commit 2fee9a3
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Showing 2 changed files with 9 additions and 4 deletions.
diff --git a/.github/workflows/deploy-image.yml b/.github/workflows/deploy-image.yml
@@ -43,4 +43,12 @@ jobs:
           tags: ${{ steps.meta.outputs.tags }}
           labels: ${{ steps.meta.outputs.labels }}
           build-args: "PYBIOCLIP_VERSION=${{ steps.meta.outputs.version }}"
-
+      - uses: eWaterCycle/setup-apptainer@v2
+        with:
+          apptainer-version: 1.3.3
+      - name: print stuff
+        run: echo "${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}"
+      - name: pull an apptainer container
+        run: apptainer pull apptainer.sif docker://${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ steps.meta.outputs.version }}
+      - name: push the apptainer container
+        run: apptainer push apptainer.sif oras://${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ steps.meta.outputs.version }}
diff --git a/Dockerfile b/Dockerfile
@@ -1,8 +1,5 @@
 FROM condaforge/miniforge3:24.3.0-0
 
-#RUN conda install pytorch torchvision torchaudio pytorch-cuda=12.4 -c pytorch -c nvidia -y && \
-#    conda clean --all -y
-
 ARG PYBIOCLIP_VERSION
 
 # Install pybioclip from the release archive because pypi can take a while to start working.