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[pull] main from pydata:main #653

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Feb 10, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/ci-additional.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -116,7 +116,7 @@ jobs:
python xarray/util/print_versions.py
- name: Install mypy
run: |
python -m pip install "mypy==1.13" --force-reinstall
python -m pip install "mypy==1.15" --force-reinstall
- name: Run mypy
run: |
Expand Down Expand Up @@ -167,7 +167,7 @@ jobs:
python xarray/util/print_versions.py
- name: Install mypy
run: |
python -m pip install "mypy==1.13" --force-reinstall
python -m pip install "mypy==1.15" --force-reinstall
- name: Run mypy
run: |
Expand Down
3 changes: 2 additions & 1 deletion doc/whats-new.rst
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,8 @@ v2025.02.0 (unreleased)

New Features
~~~~~~~~~~~~

- Allow kwargs in :py:meth:`DataTree.map_over_datasets` and :py:func:`map_over_datasets` (:issue:`10009`, :pull:`10012`).
By `Kai Mühlbauer <https://github.com/kmuehlbauer>`_.

Breaking changes
~~~~~~~~~~~~~~~~
Expand Down
2 changes: 1 addition & 1 deletion xarray/core/dataarray.py
Original file line number Diff line number Diff line change
Expand Up @@ -893,7 +893,7 @@ def _item_key_to_dict(self, key: Any) -> Mapping[Hashable, Any]:
return dict(zip(self.dims, key, strict=True))

def _getitem_coord(self, key: Any) -> Self:
from xarray.core.dataset import _get_virtual_variable
from xarray.core.dataset_utils import _get_virtual_variable

try:
var = self._coords[key]
Expand Down
134 changes: 4 additions & 130 deletions xarray/core/dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -24,11 +24,14 @@
from operator import methodcaller
from os import PathLike
from types import EllipsisType
from typing import IO, TYPE_CHECKING, Any, Generic, Literal, cast, overload
from typing import IO, TYPE_CHECKING, Any, Literal, cast, overload

import numpy as np
from pandas.api.types import is_extension_array_dtype

from xarray.core.dataset_utils import _get_virtual_variable, _LocIndexer
from xarray.core.dataset_variables import DataVariables

# remove once numpy 2.0 is the oldest supported version
try:
from numpy.exceptions import RankWarning
Expand Down Expand Up @@ -98,7 +101,6 @@
T_ChunksFreq,
T_DataArray,
T_DataArrayOrSet,
T_Dataset,
ZarrWriteModes,
)
from xarray.core.utils import (
Expand Down Expand Up @@ -196,43 +198,6 @@
]


def _get_virtual_variable(
variables, key: Hashable, dim_sizes: Mapping | None = None
) -> tuple[Hashable, Hashable, Variable]:
"""Get a virtual variable (e.g., 'time.year') from a dict of xarray.Variable
objects (if possible)

"""
from xarray.core.dataarray import DataArray

if dim_sizes is None:
dim_sizes = {}

if key in dim_sizes:
data = pd.Index(range(dim_sizes[key]), name=key)
variable = IndexVariable((key,), data)
return key, key, variable

if not isinstance(key, str):
raise KeyError(key)

split_key = key.split(".", 1)
if len(split_key) != 2:
raise KeyError(key)

ref_name, var_name = split_key
ref_var = variables[ref_name]

if _contains_datetime_like_objects(ref_var):
ref_var = DataArray(ref_var)
data = getattr(ref_var.dt, var_name).data
else:
data = getattr(ref_var, var_name).data
virtual_var = Variable(ref_var.dims, data)

return ref_name, var_name, virtual_var


def _get_chunk(var: Variable, chunks, chunkmanager: ChunkManagerEntrypoint):
"""
Return map from each dim to chunk sizes, accounting for backend's preferred chunks.
Expand Down Expand Up @@ -367,19 +332,6 @@ def _maybe_chunk(
return var


def as_dataset(obj: Any) -> Dataset:
"""Cast the given object to a Dataset.

Handles Datasets, DataArrays and dictionaries of variables. A new Dataset
object is only created if the provided object is not already one.
"""
if hasattr(obj, "to_dataset"):
obj = obj.to_dataset()
if not isinstance(obj, Dataset):
obj = Dataset(obj)
return obj


def _get_func_args(func, param_names):
"""Use `inspect.signature` to try accessing `func` args. Otherwise, ensure
they are provided by user.
Expand Down Expand Up @@ -468,84 +420,6 @@ def merge_data_and_coords(data_vars: DataVars, coords) -> _MergeResult:
)


class DataVariables(Mapping[Any, "DataArray"]):
__slots__ = ("_dataset",)

def __init__(self, dataset: Dataset):
self._dataset = dataset

def __iter__(self) -> Iterator[Hashable]:
return (
key
for key in self._dataset._variables
if key not in self._dataset._coord_names
)

def __len__(self) -> int:
length = len(self._dataset._variables) - len(self._dataset._coord_names)
assert length >= 0, "something is wrong with Dataset._coord_names"
return length

def __contains__(self, key: Hashable) -> bool:
return key in self._dataset._variables and key not in self._dataset._coord_names

def __getitem__(self, key: Hashable) -> DataArray:
if key not in self._dataset._coord_names:
return self._dataset[key]
raise KeyError(key)

def __repr__(self) -> str:
return formatting.data_vars_repr(self)

@property
def variables(self) -> Mapping[Hashable, Variable]:
all_variables = self._dataset.variables
return Frozen({k: all_variables[k] for k in self})

@property
def dtypes(self) -> Frozen[Hashable, np.dtype]:
"""Mapping from data variable names to dtypes.

Cannot be modified directly, but is updated when adding new variables.

See Also
--------
Dataset.dtype
"""
return self._dataset.dtypes

def _ipython_key_completions_(self):
"""Provide method for the key-autocompletions in IPython."""
return [
key
for key in self._dataset._ipython_key_completions_()
if key not in self._dataset._coord_names
]


class _LocIndexer(Generic[T_Dataset]):
__slots__ = ("dataset",)

def __init__(self, dataset: T_Dataset):
self.dataset = dataset

def __getitem__(self, key: Mapping[Any, Any]) -> T_Dataset:
if not utils.is_dict_like(key):
raise TypeError("can only lookup dictionaries from Dataset.loc")
return self.dataset.sel(key)

def __setitem__(self, key, value) -> None:
if not utils.is_dict_like(key):
raise TypeError(
"can only set locations defined by dictionaries from Dataset.loc."
f" Got: {key}"
)

# set new values
dim_indexers = map_index_queries(self.dataset, key).dim_indexers
self.dataset[dim_indexers] = value


class Dataset(
DataWithCoords,
DatasetAggregations,
Expand Down
91 changes: 91 additions & 0 deletions xarray/core/dataset_utils.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,91 @@
from __future__ import annotations

import typing
from collections.abc import Hashable, Mapping
from typing import Any, Generic

import pandas as pd

from xarray.core import utils
from xarray.core.common import _contains_datetime_like_objects
from xarray.core.indexing import map_index_queries
from xarray.core.types import T_Dataset
from xarray.core.variable import IndexVariable, Variable

if typing.TYPE_CHECKING:
from xarray.core.dataset import Dataset


class _LocIndexer(Generic[T_Dataset]):
__slots__ = ("dataset",)

def __init__(self, dataset: T_Dataset):
self.dataset = dataset

def __getitem__(self, key: Mapping[Any, Any]) -> T_Dataset:
if not utils.is_dict_like(key):
raise TypeError("can only lookup dictionaries from Dataset.loc")
return self.dataset.sel(key)

def __setitem__(self, key, value) -> None:
if not utils.is_dict_like(key):
raise TypeError(
"can only set locations defined by dictionaries from Dataset.loc."
f" Got: {key}"
)

# set new values
dim_indexers = map_index_queries(self.dataset, key).dim_indexers
self.dataset[dim_indexers] = value


def as_dataset(obj: Any) -> Dataset:
"""Cast the given object to a Dataset.

Handles Datasets, DataArrays and dictionaries of variables. A new Dataset
object is only created if the provided object is not already one.
"""
from xarray.core.dataset import Dataset

if hasattr(obj, "to_dataset"):
obj = obj.to_dataset()
if not isinstance(obj, Dataset):
obj = Dataset(obj)
return obj


def _get_virtual_variable(
variables, key: Hashable, dim_sizes: Mapping | None = None
) -> tuple[Hashable, Hashable, Variable]:
"""Get a virtual variable (e.g., 'time.year') from a dict of xarray.Variable
objects (if possible)

"""
from xarray.core.dataarray import DataArray

if dim_sizes is None:
dim_sizes = {}

if key in dim_sizes:
data = pd.Index(range(dim_sizes[key]), name=key)
variable = IndexVariable((key,), data)
return key, key, variable

if not isinstance(key, str):
raise KeyError(key)

split_key = key.split(".", 1)
if len(split_key) != 2:
raise KeyError(key)

ref_name, var_name = split_key
ref_var = variables[ref_name]

if _contains_datetime_like_objects(ref_var):
ref_var = DataArray(ref_var)
data = getattr(ref_var.dt, var_name).data
else:
data = getattr(ref_var, var_name).data
virtual_var = Variable(ref_var.dims, data)

return ref_name, var_name, virtual_var
68 changes: 68 additions & 0 deletions xarray/core/dataset_variables.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,68 @@
import typing
from collections.abc import Hashable, Iterator, Mapping
from typing import Any

import numpy as np

from xarray.core import formatting
from xarray.core.utils import Frozen
from xarray.core.variable import Variable

if typing.TYPE_CHECKING:
from xarray.core.dataarray import DataArray
from xarray.core.dataset import Dataset


class DataVariables(Mapping[Any, "DataArray"]):
__slots__ = ("_dataset",)

def __init__(self, dataset: "Dataset"):
self._dataset = dataset

def __iter__(self) -> Iterator[Hashable]:
return (
key
for key in self._dataset._variables
if key not in self._dataset._coord_names
)

def __len__(self) -> int:
length = len(self._dataset._variables) - len(self._dataset._coord_names)
assert length >= 0, "something is wrong with Dataset._coord_names"
return length

def __contains__(self, key: Hashable) -> bool:
return key in self._dataset._variables and key not in self._dataset._coord_names

def __getitem__(self, key: Hashable) -> "DataArray":
if key not in self._dataset._coord_names:
return self._dataset[key]
raise KeyError(key)

def __repr__(self) -> str:
return formatting.data_vars_repr(self)

@property
def variables(self) -> Mapping[Hashable, Variable]:
all_variables = self._dataset.variables
return Frozen({k: all_variables[k] for k in self})

@property
def dtypes(self) -> Frozen[Hashable, np.dtype]:
"""Mapping from data variable names to dtypes.

Cannot be modified directly, but is updated when adding new variables.

See Also
--------
Dataset.dtype
"""
return self._dataset.dtypes

def _ipython_key_completions_(self):
"""Provide method for the key-autocompletions in IPython."""
return [
key
for key in self._dataset._ipython_key_completions_()
if key not in self._dataset._coord_names
]
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