Merge pull request #275 from ISISNeutronMuon/chi/restructuring

Restructured code and other small changes
ISISNeutronMuon · Jan 12, 2024 · 2dbf415 · 2dbf415
2 parents 95f8391 + ba97a4a
commit 2dbf415
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Showing 546 changed files with 111 additions and 123 deletions.
diff --git a/.github/workflows/wheels.yml b/.github/workflows/wheels.yml
@@ -28,7 +28,7 @@ jobs:
         run: (cd MDANSE && python -m pip install -r requirements.txt)
 
       - name: Build wheels
-        run: (cd MDANSE && python setup.py bdist_wheel)
+        run: (cd MDANSE && python -m build)
         # to supply options, put them in 'env', like:
         # env:
         #   CIBW_SOME_OPTION: value
@@ -77,7 +77,7 @@ jobs:
         run: (cd MDANSE_GUI && python -m pip install -r requirements.txt)
 
       - name: Build wheels
-        run: (cd MDANSE_GUI && python setup.py bdist_wheel)
+        run: (cd MDANSE_GUI && python -m build)
         # to supply options, put them in 'env', like:
         # env:
         #   CIBW_SOME_OPTION: value

diff --git a/.gitignore b/.gitignore
@@ -7,8 +7,30 @@
 .pydevproject
 .settings
 .vscode
-MANIFEST
 *.pyc
+
+# Distribution / packaging
+.Python
 build/
+develop-eggs/
 dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# extensions
+*.pyd
 
+# pycharm
+.idea
diff --git a/MDANSE/MANIFEST.in b/MDANSE/MANIFEST.in
@@ -1,11 +1,11 @@
-include LICENSE
 include LICENCE
+include requirements.txt
 
 recursive-include Extensions/qhull_lib *.h *c *.pxd
+recursive-include Extensions/xtc *.h *c *.pxd
+recursive-include Src/MDANSE/Chemistry *.json
+recursive-include Src/MDANSE/Framework *.json
 
 recursive-include Doc *
 
-include Scripts/*
-
 recursive-include Tests *.py
-
diff --git a/MDANSE/Src/Chemistry/ChemicalEntity.py → ...SE/Src/MDANSE/Chemistry/ChemicalEntity.py b/MDANSE/Src/Chemistry/ChemicalEntity.py → ...SE/Src/MDANSE/Chemistry/ChemicalEntity.py
diff --git a/MDANSE/Src/Chemistry/Databases.py → MDANSE/Src/MDANSE/Chemistry/Databases.py b/MDANSE/Src/Chemistry/Databases.py → MDANSE/Src/MDANSE/Chemistry/Databases.py
diff --git a/MDANSE/Src/Chemistry/H5ChemicalEntity.py → .../Src/MDANSE/Chemistry/H5ChemicalEntity.py b/MDANSE/Src/Chemistry/H5ChemicalEntity.py → .../Src/MDANSE/Chemistry/H5ChemicalEntity.py
diff --git a/MDANSE/Src/Chemistry/Structrures.py → MDANSE/Src/MDANSE/Chemistry/Structrures.py b/MDANSE/Src/Chemistry/Structrures.py → MDANSE/Src/MDANSE/Chemistry/Structrures.py
diff --git a/MDANSE/Src/Chemistry/__init__.py → MDANSE/Src/MDANSE/Chemistry/__init__.py b/MDANSE/Src/Chemistry/__init__.py → MDANSE/Src/MDANSE/Chemistry/__init__.py
diff --git a/MDANSE/Src/Chemistry/atoms.json → MDANSE/Src/MDANSE/Chemistry/atoms.json b/MDANSE/Src/Chemistry/atoms.json → MDANSE/Src/MDANSE/Chemistry/atoms.json
diff --git a/MDANSE/Src/Chemistry/molecules.json → MDANSE/Src/MDANSE/Chemistry/molecules.json b/MDANSE/Src/Chemistry/molecules.json → MDANSE/Src/MDANSE/Chemistry/molecules.json
diff --git a/MDANSE/Src/Chemistry/nucleotides.json → MDANSE/Src/MDANSE/Chemistry/nucleotides.json b/MDANSE/Src/Chemistry/nucleotides.json → MDANSE/Src/MDANSE/Chemistry/nucleotides.json
diff --git a/MDANSE/Src/Chemistry/residues.json → MDANSE/Src/MDANSE/Chemistry/residues.json b/MDANSE/Src/Chemistry/residues.json → MDANSE/Src/MDANSE/Chemistry/residues.json
diff --git a/MDANSE/Src/Core/ClassRegistry.py → MDANSE/Src/MDANSE/Core/ClassRegistry.py b/MDANSE/Src/Core/ClassRegistry.py → MDANSE/Src/MDANSE/Core/ClassRegistry.py
diff --git a/MDANSE/Src/Core/Decorators.py → MDANSE/Src/MDANSE/Core/Decorators.py b/MDANSE/Src/Core/Decorators.py → MDANSE/Src/MDANSE/Core/Decorators.py
diff --git a/MDANSE/Src/Core/Error.py → MDANSE/Src/MDANSE/Core/Error.py b/MDANSE/Src/Core/Error.py → MDANSE/Src/MDANSE/Core/Error.py
diff --git a/MDANSE/Src/Core/Platform.py → MDANSE/Src/MDANSE/Core/Platform.py b/MDANSE/Src/Core/Platform.py → MDANSE/Src/MDANSE/Core/Platform.py
diff --git a/MDANSE/Src/Core/Singleton.py → MDANSE/Src/MDANSE/Core/Singleton.py b/MDANSE/Src/Core/Singleton.py → MDANSE/Src/MDANSE/Core/Singleton.py
diff --git a/MDANSE/Src/Core/SubclassFactory.py → MDANSE/Src/MDANSE/Core/SubclassFactory.py b/MDANSE/Src/Core/SubclassFactory.py → MDANSE/Src/MDANSE/Core/SubclassFactory.py
diff --git a/MDANSE/Src/Core/__init__.py → MDANSE/Src/MDANSE/Core/__init__.py b/MDANSE/Src/Core/__init__.py → MDANSE/Src/MDANSE/Core/__init__.py
diff --git a/MDANSE/Src/Doc/simple_help.html → MDANSE/Src/MDANSE/Doc/simple_help.html b/MDANSE/Src/Doc/simple_help.html → MDANSE/Src/MDANSE/Doc/simple_help.html
diff --git a/MDANSE/Src/Doc/simple_help.md → MDANSE/Src/MDANSE/Doc/simple_help.md b/MDANSE/Src/Doc/simple_help.md → MDANSE/Src/MDANSE/Doc/simple_help.md
diff --git a/MDANSE/Src/Doc/simple_help.txt → MDANSE/Src/MDANSE/Doc/simple_help.txt b/MDANSE/Src/Doc/simple_help.txt → MDANSE/Src/MDANSE/Doc/simple_help.txt
diff --git a/MDANSE/Src/Doc/theory_help.pdf → MDANSE/Src/MDANSE/Doc/theory_help.pdf b/MDANSE/Src/Doc/theory_help.pdf → MDANSE/Src/MDANSE/Doc/theory_help.pdf
diff --git a/MDANSE/Src/Extensions/.gitignore → MDANSE/Src/MDANSE/Extensions/.gitignore b/MDANSE/Src/Extensions/.gitignore → MDANSE/Src/MDANSE/Extensions/.gitignore
diff --git a/MDANSE/Src/Extensions/__init__.py → MDANSE/Src/MDANSE/Extensions/__init__.py b/MDANSE/Src/Extensions/__init__.py → MDANSE/Src/MDANSE/Extensions/__init__.py
diff --git a/MDANSE/Src/Externals/__init__.py → MDANSE/Src/MDANSE/Externals/__init__.py b/MDANSE/Src/Externals/__init__.py → MDANSE/Src/MDANSE/Externals/__init__.py
diff --git a/MDANSE/Src/Externals/svgfig/__init__.py → ...E/Src/MDANSE/Externals/svgfig/__init__.py b/MDANSE/Src/Externals/svgfig/__init__.py → ...E/Src/MDANSE/Externals/svgfig/__init__.py
diff --git a/MDANSE/Src/Externals/svgfig/svgfig.py → MDANSE/Src/MDANSE/Externals/svgfig/svgfig.py b/MDANSE/Src/Externals/svgfig/svgfig.py → MDANSE/Src/MDANSE/Externals/svgfig/svgfig.py
diff --git a/MDANSE/Src/Framework/AtomSelectionParser.py → ...c/MDANSE/Framework/AtomSelectionParser.py b/MDANSE/Src/Framework/AtomSelectionParser.py → ...c/MDANSE/Framework/AtomSelectionParser.py
diff --git a/MDANSE/Src/Framework/Configurable.py → MDANSE/Src/MDANSE/Framework/Configurable.py b/MDANSE/Src/Framework/Configurable.py → MDANSE/Src/MDANSE/Framework/Configurable.py
diff --git a/...onfigurators/AtomSelectionConfigurator.py → ...onfigurators/AtomSelectionConfigurator.py b/...onfigurators/AtomSelectionConfigurator.py → ...onfigurators/AtomSelectionConfigurator.py
diff --git a/...gurators/AtomTransmutationConfigurator.py → ...gurators/AtomTransmutationConfigurator.py b/...gurators/AtomTransmutationConfigurator.py → ...gurators/AtomTransmutationConfigurator.py
diff --git a/...rk/Configurators/AtomsListConfigurator.py → ...rk/Configurators/AtomsListConfigurator.py b/...rk/Configurators/AtomsListConfigurator.py → ...rk/Configurators/AtomsListConfigurator.py
diff --git a/...onfigurators/AxisSelectionConfigurator.py → ...onfigurators/AxisSelectionConfigurator.py b/...onfigurators/AxisSelectionConfigurator.py → ...onfigurators/AxisSelectionConfigurator.py
diff --git a/...nfigurators/BasisSelectionConfigurator.py → ...nfigurators/BasisSelectionConfigurator.py b/...nfigurators/BasisSelectionConfigurator.py → ...nfigurators/BasisSelectionConfigurator.py
diff --git a/...work/Configurators/BooleanConfigurator.py → ...work/Configurators/BooleanConfigurator.py b/...work/Configurators/BooleanConfigurator.py → ...work/Configurators/BooleanConfigurator.py
diff --git a/...onfigurators/ComplexNumberConfigurator.py → ...onfigurators/ComplexNumberConfigurator.py b/...onfigurators/ComplexNumberConfigurator.py → ...onfigurators/ComplexNumberConfigurator.py
diff --git a/...mework/Configurators/FloatConfigurator.py → ...mework/Configurators/FloatConfigurator.py b/...mework/Configurators/FloatConfigurator.py → ...mework/Configurators/FloatConfigurator.py
diff --git a/...ework/Configurators/FramesConfigurator.py → ...ework/Configurators/FramesConfigurator.py b/...ework/Configurators/FramesConfigurator.py → ...ework/Configurators/FramesConfigurator.py
diff --git a/...onfigurators/GroupingLevelConfigurator.py → ...onfigurators/GroupingLevelConfigurator.py b/...onfigurators/GroupingLevelConfigurator.py → ...onfigurators/GroupingLevelConfigurator.py
diff --git a/...Configurators/HDFInputFileConfigurator.py → ...Configurators/HDFInputFileConfigurator.py b/...Configurators/HDFInputFileConfigurator.py → ...Configurators/HDFInputFileConfigurator.py
diff --git a/...onfigurators/HDFTrajectoryConfigurator.py → ...onfigurators/HDFTrajectoryConfigurator.py b/...onfigurators/HDFTrajectoryConfigurator.py → ...onfigurators/HDFTrajectoryConfigurator.py
diff --git a/.../Framework/Configurators/IConfigurator.py → .../Framework/Configurators/IConfigurator.py b/.../Framework/Configurators/IConfigurator.py → .../Framework/Configurators/IConfigurator.py
diff --git a/...nfigurators/InputDirectoryConfigurator.py → ...nfigurators/InputDirectoryConfigurator.py b/...nfigurators/InputDirectoryConfigurator.py → ...nfigurators/InputDirectoryConfigurator.py
diff --git a/...rk/Configurators/InputFileConfigurator.py → ...rk/Configurators/InputFileConfigurator.py b/...rk/Configurators/InputFileConfigurator.py → ...rk/Configurators/InputFileConfigurator.py
diff --git a/...ators/InstrumentResolutionConfigurator.py → ...ators/InstrumentResolutionConfigurator.py b/...ators/InstrumentResolutionConfigurator.py → ...ators/InstrumentResolutionConfigurator.py
diff --git a/...work/Configurators/IntegerConfigurator.py → ...work/Configurators/IntegerConfigurator.py b/...work/Configurators/IntegerConfigurator.py → ...work/Configurators/IntegerConfigurator.py
diff --git a/...urators/InterpolationOrderConfigurator.py → ...urators/InterpolationOrderConfigurator.py b/...urators/InterpolationOrderConfigurator.py → ...urators/InterpolationOrderConfigurator.py
diff --git a/...igurators/McStasInstrumentConfigurator.py → ...igurators/McStasInstrumentConfigurator.py b/...igurators/McStasInstrumentConfigurator.py → ...igurators/McStasInstrumentConfigurator.py
diff --git a/...onfigurators/McStasOptionsConfigurator.py → ...onfigurators/McStasOptionsConfigurator.py b/...onfigurators/McStasOptionsConfigurator.py → ...onfigurators/McStasOptionsConfigurator.py
diff --git a/...igurators/McStasParametersConfigurator.py → ...igurators/McStasParametersConfigurator.py b/...igurators/McStasParametersConfigurator.py → ...igurators/McStasParametersConfigurator.py
diff --git a/...figurators/MultipleChoicesConfigurator.py → ...figurators/MultipleChoicesConfigurator.py b/...figurators/MultipleChoicesConfigurator.py → ...figurators/MultipleChoicesConfigurator.py
diff --git a/...figurators/OutputDirectoryConfigurator.py → ...figurators/OutputDirectoryConfigurator.py b/...figurators/OutputDirectoryConfigurator.py → ...figurators/OutputDirectoryConfigurator.py
diff --git a/.../Configurators/OutputFilesConfigurator.py → .../Configurators/OutputFilesConfigurator.py b/.../Configurators/OutputFilesConfigurator.py → .../Configurators/OutputFilesConfigurator.py
diff --git a/...onfigurators/PartialChargeConfigurator.py → ...onfigurators/PartialChargeConfigurator.py b/...onfigurators/PartialChargeConfigurator.py → ...onfigurators/PartialChargeConfigurator.py
diff --git a/...k/Configurators/ProjectionConfigurator.py → ...k/Configurators/ProjectionConfigurator.py b/...k/Configurators/ProjectionConfigurator.py → ...k/Configurators/ProjectionConfigurator.py
diff --git a/...Configurators/PythonObjectConfigurator.py → ...Configurators/PythonObjectConfigurator.py b/...Configurators/PythonObjectConfigurator.py → ...Configurators/PythonObjectConfigurator.py
diff --git a/...Configurators/PythonScriptConfigurator.py → ...Configurators/PythonScriptConfigurator.py b/...Configurators/PythonScriptConfigurator.py → ...Configurators/PythonScriptConfigurator.py
diff --git a/...ork/Configurators/QVectorsConfigurator.py → ...ork/Configurators/QVectorsConfigurator.py b/...ork/Configurators/QVectorsConfigurator.py → ...ork/Configurators/QVectorsConfigurator.py
diff --git a/...mework/Configurators/RangeConfigurator.py → ...mework/Configurators/RangeConfigurator.py b/...mework/Configurators/RangeConfigurator.py → ...mework/Configurators/RangeConfigurator.py
diff --git a/.../Configurators/RunningModeConfigurator.py → .../Configurators/RunningModeConfigurator.py b/.../Configurators/RunningModeConfigurator.py → .../Configurators/RunningModeConfigurator.py
diff --git a/...Configurators/SingleChoiceConfigurator.py → ...Configurators/SingleChoiceConfigurator.py b/...Configurators/SingleChoiceConfigurator.py → ...Configurators/SingleChoiceConfigurator.py
diff --git a/...igurators/SingleOutputFileConfigurator.py → ...igurators/SingleOutputFileConfigurator.py b/...igurators/SingleOutputFileConfigurator.py → ...igurators/SingleOutputFileConfigurator.py
diff --git a/...ework/Configurators/StringConfigurator.py → ...ework/Configurators/StringConfigurator.py b/...ework/Configurators/StringConfigurator.py → ...ework/Configurators/StringConfigurator.py
diff --git a/...urators/TrajectoryVariableConfigurator.py → ...urators/TrajectoryVariableConfigurator.py b/...urators/TrajectoryVariableConfigurator.py → ...urators/TrajectoryVariableConfigurator.py
diff --git a/...ework/Configurators/VectorConfigurator.py → ...ework/Configurators/VectorConfigurator.py b/...ework/Configurators/VectorConfigurator.py → ...ework/Configurators/VectorConfigurator.py
diff --git a/...work/Configurators/WeightsConfigurator.py → ...work/Configurators/WeightsConfigurator.py b/...work/Configurators/WeightsConfigurator.py → ...work/Configurators/WeightsConfigurator.py
diff --git a/...E/Src/Framework/Configurators/__init__.py → ...DANSE/Framework/Configurators/__init__.py b/...E/Src/Framework/Configurators/__init__.py → ...DANSE/Framework/Configurators/__init__.py
diff --git a/MDANSE/Src/Framework/Converters/ASE.py → ...SE/Src/MDANSE/Framework/Converters/ASE.py b/MDANSE/Src/Framework/Converters/ASE.py → ...SE/Src/MDANSE/Framework/Converters/ASE.py
diff --git a/MDANSE/Src/Framework/Converters/CASTEP.py → ...Src/MDANSE/Framework/Converters/CASTEP.py b/MDANSE/Src/Framework/Converters/CASTEP.py → ...Src/MDANSE/Framework/Converters/CASTEP.py
diff --git a/MDANSE/Src/Framework/Converters/CHARMM.py → ...Src/MDANSE/Framework/Converters/CHARMM.py b/MDANSE/Src/Framework/Converters/CHARMM.py → ...Src/MDANSE/Framework/Converters/CHARMM.py
diff --git a/MDANSE/Src/Framework/Converters/CP2K.py → ...E/Src/MDANSE/Framework/Converters/CP2K.py b/MDANSE/Src/Framework/Converters/CP2K.py → ...E/Src/MDANSE/Framework/Converters/CP2K.py
diff --git a/MDANSE/Src/Framework/Converters/Converter.py → .../MDANSE/Framework/Converters/Converter.py b/MDANSE/Src/Framework/Converters/Converter.py → .../MDANSE/Framework/Converters/Converter.py
diff --git a/MDANSE/Src/Framework/Converters/DCD.py → ...SE/Src/MDANSE/Framework/Converters/DCD.py b/MDANSE/Src/Framework/Converters/DCD.py → ...SE/Src/MDANSE/Framework/Converters/DCD.py
diff --git a/MDANSE/Src/Framework/Converters/DFTB.py → ...E/Src/MDANSE/Framework/Converters/DFTB.py b/MDANSE/Src/Framework/Converters/DFTB.py → ...E/Src/MDANSE/Framework/Converters/DFTB.py
diff --git a/MDANSE/Src/Framework/Converters/DL_POLY.py → ...rc/MDANSE/Framework/Converters/DL_POLY.py b/MDANSE/Src/Framework/Converters/DL_POLY.py → ...rc/MDANSE/Framework/Converters/DL_POLY.py
diff --git a/MDANSE/Src/Framework/Converters/DMol.py → ...E/Src/MDANSE/Framework/Converters/DMol.py b/MDANSE/Src/Framework/Converters/DMol.py → ...E/Src/MDANSE/Framework/Converters/DMol.py
diff --git a/MDANSE/Src/Framework/Converters/Discover.py → ...c/MDANSE/Framework/Converters/Discover.py b/MDANSE/Src/Framework/Converters/Discover.py → ...c/MDANSE/Framework/Converters/Discover.py
diff --git a/MDANSE/Src/Framework/Converters/Forcite.py → ...rc/MDANSE/Framework/Converters/Forcite.py b/MDANSE/Src/Framework/Converters/Forcite.py → ...rc/MDANSE/Framework/Converters/Forcite.py
diff --git a/MDANSE/Src/Framework/Converters/Gromacs.py → ...rc/MDANSE/Framework/Converters/Gromacs.py b/MDANSE/Src/Framework/Converters/Gromacs.py → ...rc/MDANSE/Framework/Converters/Gromacs.py
diff --git a/MDANSE/Src/Framework/Converters/LAMMPS.py → ...Src/MDANSE/Framework/Converters/LAMMPS.py b/MDANSE/Src/Framework/Converters/LAMMPS.py → ...Src/MDANSE/Framework/Converters/LAMMPS.py
diff --git a/MDANSE/Src/Framework/Converters/NAMD.py → ...E/Src/MDANSE/Framework/Converters/NAMD.py b/MDANSE/Src/Framework/Converters/NAMD.py → ...E/Src/MDANSE/Framework/Converters/NAMD.py
diff --git a/MDANSE/Src/Framework/Converters/VASP.py → ...E/Src/MDANSE/Framework/Converters/VASP.py b/MDANSE/Src/Framework/Converters/VASP.py → ...E/Src/MDANSE/Framework/Converters/VASP.py
diff --git a/MDANSE/Src/Framework/Converters/XPLOR.py → .../Src/MDANSE/Framework/Converters/XPLOR.py b/MDANSE/Src/Framework/Converters/XPLOR.py → .../Src/MDANSE/Framework/Converters/XPLOR.py
diff --git a/MDANSE/Src/Framework/Converters/__init__.py → ...c/MDANSE/Framework/Converters/__init__.py b/MDANSE/Src/Framework/Converters/__init__.py → ...c/MDANSE/Framework/Converters/__init__.py
diff --git a/MDANSE/Src/Framework/Formats/ASCIIFormat.py → ...c/MDANSE/Framework/Formats/ASCIIFormat.py b/MDANSE/Src/Framework/Formats/ASCIIFormat.py → ...c/MDANSE/Framework/Formats/ASCIIFormat.py
diff --git a/MDANSE/Src/Framework/Formats/HDFFormat.py → ...Src/MDANSE/Framework/Formats/HDFFormat.py b/MDANSE/Src/Framework/Formats/HDFFormat.py → ...Src/MDANSE/Framework/Formats/HDFFormat.py
diff --git a/MDANSE/Src/Framework/Formats/IFormat.py → ...E/Src/MDANSE/Framework/Formats/IFormat.py b/MDANSE/Src/Framework/Formats/IFormat.py → ...E/Src/MDANSE/Framework/Formats/IFormat.py
diff --git a/MDANSE/Src/Framework/Formats/SVGFormat.py → ...Src/MDANSE/Framework/Formats/SVGFormat.py b/MDANSE/Src/Framework/Formats/SVGFormat.py → ...Src/MDANSE/Framework/Formats/SVGFormat.py
diff --git a/MDANSE/Src/Framework/Formats/__init__.py → .../Src/MDANSE/Framework/Formats/__init__.py b/MDANSE/Src/Framework/Formats/__init__.py → .../Src/MDANSE/Framework/Formats/__init__.py
diff --git a/...ework/Handlers/ColorizingStreamHandler.py → ...ework/Handlers/ColorizingStreamHandler.py b/...ework/Handlers/ColorizingStreamHandler.py → ...ework/Handlers/ColorizingStreamHandler.py
diff --git a/MDANSE/Src/Framework/Handlers/IHandler.py → ...Src/MDANSE/Framework/Handlers/IHandler.py b/MDANSE/Src/Framework/Handlers/IHandler.py → ...Src/MDANSE/Framework/Handlers/IHandler.py
diff --git a/.../Src/Framework/Handlers/LogfileHandler.py → ...ANSE/Framework/Handlers/LogfileHandler.py b/.../Src/Framework/Handlers/LogfileHandler.py → ...ANSE/Framework/Handlers/LogfileHandler.py
diff --git a/MDANSE/Src/Framework/Handlers/__init__.py → ...Src/MDANSE/Framework/Handlers/__init__.py b/MDANSE/Src/Framework/Handlers/__init__.py → ...Src/MDANSE/Framework/Handlers/__init__.py
diff --git a/MDANSE/Src/Framework/InputData/EmptyData.py → ...c/MDANSE/Framework/InputData/EmptyData.py b/MDANSE/Src/Framework/InputData/EmptyData.py → ...c/MDANSE/Framework/InputData/EmptyData.py
diff --git a/...ework/InputData/HDFTrajectoryInputData.py → ...ework/InputData/HDFTrajectoryInputData.py b/...ework/InputData/HDFTrajectoryInputData.py → ...ework/InputData/HDFTrajectoryInputData.py
diff --git a/MDANSE/Src/Framework/InputData/IInputData.py → .../MDANSE/Framework/InputData/IInputData.py b/MDANSE/Src/Framework/InputData/IInputData.py → .../MDANSE/Framework/InputData/IInputData.py
diff --git a/.../Src/Framework/InputData/InputFileData.py → ...ANSE/Framework/InputData/InputFileData.py b/.../Src/Framework/InputData/InputFileData.py → ...ANSE/Framework/InputData/InputFileData.py
diff --git a/.../Framework/InputData/MVITraceInputData.py → .../Framework/InputData/MVITraceInputData.py b/.../Framework/InputData/MVITraceInputData.py → .../Framework/InputData/MVITraceInputData.py
diff --git a/...ework/InputData/PeriodicTableInputData.py → ...ework/InputData/PeriodicTableInputData.py b/...ework/InputData/PeriodicTableInputData.py → ...ework/InputData/PeriodicTableInputData.py
diff --git a/MDANSE/Src/Framework/InputData/__init__.py → ...rc/MDANSE/Framework/InputData/__init__.py b/MDANSE/Src/Framework/InputData/__init__.py → ...rc/MDANSE/Framework/InputData/__init__.py
diff --git a/...amework/InstrumentResolutions/Gaussian.py → ...amework/InstrumentResolutions/Gaussian.py b/...amework/InstrumentResolutions/Gaussian.py → ...amework/InstrumentResolutions/Gaussian.py
diff --git a/...umentResolutions/IInstrumentResolution.py → ...umentResolutions/IInstrumentResolution.py b/...umentResolutions/IInstrumentResolution.py → ...umentResolutions/IInstrumentResolution.py
diff --git a/.../Framework/InstrumentResolutions/Ideal.py → .../Framework/InstrumentResolutions/Ideal.py b/.../Framework/InstrumentResolutions/Ideal.py → .../Framework/InstrumentResolutions/Ideal.py
diff --git a/...ework/InstrumentResolutions/Lorentzian.py → ...ework/InstrumentResolutions/Lorentzian.py b/...ework/InstrumentResolutions/Lorentzian.py → ...ework/InstrumentResolutions/Lorentzian.py
diff --git a/...work/InstrumentResolutions/PseudoVoigt.py → ...work/InstrumentResolutions/PseudoVoigt.py b/...work/InstrumentResolutions/PseudoVoigt.py → ...work/InstrumentResolutions/PseudoVoigt.py
diff --git a/...Framework/InstrumentResolutions/Square.py → ...Framework/InstrumentResolutions/Square.py b/...Framework/InstrumentResolutions/Square.py → ...Framework/InstrumentResolutions/Square.py
diff --git a/...ework/InstrumentResolutions/Triangular.py → ...ework/InstrumentResolutions/Triangular.py b/...ework/InstrumentResolutions/Triangular.py → ...ework/InstrumentResolutions/Triangular.py
diff --git a/...amework/InstrumentResolutions/__init__.py → ...amework/InstrumentResolutions/__init__.py b/...amework/InstrumentResolutions/__init__.py → ...amework/InstrumentResolutions/__init__.py
diff --git a/.../Src/Framework/Jobs/AngularCorrelation.py → ...ANSE/Framework/Jobs/AngularCorrelation.py b/.../Src/Framework/Jobs/AngularCorrelation.py → ...ANSE/Framework/Jobs/AngularCorrelation.py
diff --git a/MDANSE/Src/Framework/Jobs/AreaPerMolecule.py → .../MDANSE/Framework/Jobs/AreaPerMolecule.py b/MDANSE/Src/Framework/Jobs/AreaPerMolecule.py → .../MDANSE/Framework/Jobs/AreaPerMolecule.py
diff --git a/...ramework/Jobs/CenterOfMassesTrajectory.py → ...ramework/Jobs/CenterOfMassesTrajectory.py b/...ramework/Jobs/CenterOfMassesTrajectory.py → ...ramework/Jobs/CenterOfMassesTrajectory.py
diff --git a/.../Src/Framework/Jobs/CoordinationNumber.py → ...ANSE/Framework/Jobs/CoordinationNumber.py b/.../Src/Framework/Jobs/CoordinationNumber.py → ...ANSE/Framework/Jobs/CoordinationNumber.py
diff --git a/...E/Src/Framework/Jobs/CroppedTrajectory.py → ...DANSE/Framework/Jobs/CroppedTrajectory.py b/...E/Src/Framework/Jobs/CroppedTrajectory.py → ...DANSE/Framework/Jobs/CroppedTrajectory.py
diff --git a/...mework/Jobs/CurrentCorrelationFunction.py → ...mework/Jobs/CurrentCorrelationFunction.py b/...mework/Jobs/CurrentCorrelationFunction.py → ...mework/Jobs/CurrentCorrelationFunction.py
diff --git a/MDANSE/Src/Framework/Jobs/Density.py → MDANSE/Src/MDANSE/Framework/Jobs/Density.py b/MDANSE/Src/Framework/Jobs/Density.py → MDANSE/Src/MDANSE/Framework/Jobs/Density.py
diff --git a/MDANSE/Src/Framework/Jobs/DensityOfStates.py → .../MDANSE/Framework/Jobs/DensityOfStates.py b/MDANSE/Src/Framework/Jobs/DensityOfStates.py → .../MDANSE/Framework/Jobs/DensityOfStates.py
diff --git a/MDANSE/Src/Framework/Jobs/DensityProfile.py → ...c/MDANSE/Framework/Jobs/DensityProfile.py b/MDANSE/Src/Framework/Jobs/DensityProfile.py → ...c/MDANSE/Framework/Jobs/DensityProfile.py
diff --git a/...ork/Jobs/DipoleAutoCorrelationFunction.py → ...ork/Jobs/DipoleAutoCorrelationFunction.py b/...ork/Jobs/DipoleAutoCorrelationFunction.py → ...ork/Jobs/DipoleAutoCorrelationFunction.py
diff --git a/...E/Src/Framework/Jobs/DistanceHistogram.py → ...DANSE/Framework/Jobs/DistanceHistogram.py b/...E/Src/Framework/Jobs/DistanceHistogram.py → ...DANSE/Framework/Jobs/DistanceHistogram.py
diff --git a/...rk/Jobs/DynamicCoherentStructureFactor.py → ...rk/Jobs/DynamicCoherentStructureFactor.py b/...rk/Jobs/DynamicCoherentStructureFactor.py → ...rk/Jobs/DynamicCoherentStructureFactor.py
diff --git a/.../Jobs/DynamicIncoherentStructureFactor.py → .../Jobs/DynamicIncoherentStructureFactor.py b/.../Jobs/DynamicIncoherentStructureFactor.py → .../Jobs/DynamicIncoherentStructureFactor.py
diff --git a/MDANSE/Src/Framework/Jobs/Eccentricity.py → ...Src/MDANSE/Framework/Jobs/Eccentricity.py b/MDANSE/Src/Framework/Jobs/Eccentricity.py → ...Src/MDANSE/Framework/Jobs/Eccentricity.py
diff --git a/.../Jobs/ElasticIncoherentStructureFactor.py → .../Jobs/ElasticIncoherentStructureFactor.py b/.../Jobs/ElasticIncoherentStructureFactor.py → .../Jobs/ElasticIncoherentStructureFactor.py
diff --git a/...ussianDynamicIncoherentStructureFactor.py → ...ussianDynamicIncoherentStructureFactor.py b/...ussianDynamicIncoherentStructureFactor.py → ...ussianDynamicIncoherentStructureFactor.py
diff --git a/...rk/Jobs/GeneralAutoCorrelationFunction.py → ...rk/Jobs/GeneralAutoCorrelationFunction.py b/...rk/Jobs/GeneralAutoCorrelationFunction.py → ...rk/Jobs/GeneralAutoCorrelationFunction.py
diff --git a/...rk/Jobs/GlobalMotionFilteredTrajectory.py → ...rk/Jobs/GlobalMotionFilteredTrajectory.py b/...rk/Jobs/GlobalMotionFilteredTrajectory.py → ...rk/Jobs/GlobalMotionFilteredTrajectory.py
diff --git a/MDANSE/Src/Framework/Jobs/IJob.py → MDANSE/Src/MDANSE/Framework/Jobs/IJob.py b/MDANSE/Src/Framework/Jobs/IJob.py → MDANSE/Src/MDANSE/Framework/Jobs/IJob.py
diff --git a/MDANSE/Src/Framework/Jobs/JobStatus.py → ...SE/Src/MDANSE/Framework/Jobs/JobStatus.py b/MDANSE/Src/Framework/Jobs/JobStatus.py → ...SE/Src/MDANSE/Framework/Jobs/JobStatus.py
diff --git a/...Framework/Jobs/McStasVirtualInstrument.py → ...Framework/Jobs/McStasVirtualInstrument.py b/...Framework/Jobs/McStasVirtualInstrument.py → ...Framework/Jobs/McStasVirtualInstrument.py
diff --git a/.../Framework/Jobs/MeanSquareDisplacement.py → .../Framework/Jobs/MeanSquareDisplacement.py b/.../Framework/Jobs/MeanSquareDisplacement.py → .../Framework/Jobs/MeanSquareDisplacement.py
diff --git a/MDANSE/Src/Framework/Jobs/MolecularTrace.py → ...c/MDANSE/Framework/Jobs/MolecularTrace.py b/MDANSE/Src/Framework/Jobs/MolecularTrace.py → ...c/MDANSE/Framework/Jobs/MolecularTrace.py
diff --git a/MDANSE/Src/Framework/Jobs/MoleculeFinder.py → ...c/MDANSE/Framework/Jobs/MoleculeFinder.py b/MDANSE/Src/Framework/Jobs/MoleculeFinder.py → ...c/MDANSE/Framework/Jobs/MoleculeFinder.py
diff --git a/...obs/NeutronDynamicTotalStructureFactor.py → ...obs/NeutronDynamicTotalStructureFactor.py b/...obs/NeutronDynamicTotalStructureFactor.py → ...obs/NeutronDynamicTotalStructureFactor.py
diff --git a/MDANSE/Src/Framework/Jobs/OrderParameter.py → ...c/MDANSE/Framework/Jobs/OrderParameter.py b/MDANSE/Src/Framework/Jobs/OrderParameter.py → ...c/MDANSE/Framework/Jobs/OrderParameter.py
diff --git a/...ramework/Jobs/PairDistributionFunction.py → ...ramework/Jobs/PairDistributionFunction.py b/...ramework/Jobs/PairDistributionFunction.py → ...ramework/Jobs/PairDistributionFunction.py
diff --git a/...k/Jobs/PositionAutoCorrelationFunction.py → ...k/Jobs/PositionAutoCorrelationFunction.py b/...k/Jobs/PositionAutoCorrelationFunction.py → ...k/Jobs/PositionAutoCorrelationFunction.py
diff --git a/...SE/Src/Framework/Jobs/RadiusOfGyration.py → ...MDANSE/Framework/Jobs/RadiusOfGyration.py b/...SE/Src/Framework/Jobs/RadiusOfGyration.py → ...MDANSE/Framework/Jobs/RadiusOfGyration.py
diff --git a/...Src/Framework/Jobs/RigidBodyTrajectory.py → ...NSE/Framework/Jobs/RigidBodyTrajectory.py b/...Src/Framework/Jobs/RigidBodyTrajectory.py → ...NSE/Framework/Jobs/RigidBodyTrajectory.py
diff --git a/...Framework/Jobs/RootMeanSquareDeviation.py → ...Framework/Jobs/RootMeanSquareDeviation.py b/...Framework/Jobs/RootMeanSquareDeviation.py → ...Framework/Jobs/RootMeanSquareDeviation.py
diff --git a/...amework/Jobs/RootMeanSquareFluctuation.py → ...amework/Jobs/RootMeanSquareFluctuation.py b/...amework/Jobs/RootMeanSquareFluctuation.py → ...amework/Jobs/RootMeanSquareFluctuation.py
diff --git a/...ramework/Jobs/SolventAccessibleSurface.py → ...ramework/Jobs/SolventAccessibleSurface.py b/...ramework/Jobs/SolventAccessibleSurface.py → ...ramework/Jobs/SolventAccessibleSurface.py
diff --git a/...c/Framework/Jobs/StaticStructureFactor.py → ...E/Framework/Jobs/StaticStructureFactor.py b/...c/Framework/Jobs/StaticStructureFactor.py → ...E/Framework/Jobs/StaticStructureFactor.py
diff --git a/.../StructureFactorFromScatteringFunction.py → .../StructureFactorFromScatteringFunction.py b/.../StructureFactorFromScatteringFunction.py → .../StructureFactorFromScatteringFunction.py
diff --git a/MDANSE/Src/Framework/Jobs/Temperature.py → .../Src/MDANSE/Framework/Jobs/Temperature.py b/MDANSE/Src/Framework/Jobs/Temperature.py → .../Src/MDANSE/Framework/Jobs/Temperature.py
diff --git a/.../Src/Framework/Jobs/UnfoldedTrajectory.py → ...ANSE/Framework/Jobs/UnfoldedTrajectory.py b/.../Src/Framework/Jobs/UnfoldedTrajectory.py → ...ANSE/Framework/Jobs/UnfoldedTrajectory.py
diff --git a/...k/Jobs/VelocityAutoCorrelationFunction.py → ...k/Jobs/VelocityAutoCorrelationFunction.py b/...k/Jobs/VelocityAutoCorrelationFunction.py → ...k/Jobs/VelocityAutoCorrelationFunction.py
diff --git a/MDANSE/Src/Framework/Jobs/Voronoi.py → MDANSE/Src/MDANSE/Framework/Jobs/Voronoi.py b/MDANSE/Src/Framework/Jobs/Voronoi.py → MDANSE/Src/MDANSE/Framework/Jobs/Voronoi.py
diff --git a/...amework/Jobs/XRayStaticStructureFactor.py → ...amework/Jobs/XRayStaticStructureFactor.py b/...amework/Jobs/XRayStaticStructureFactor.py → ...amework/Jobs/XRayStaticStructureFactor.py
diff --git a/MDANSE/Src/Framework/Jobs/__init__.py → MDANSE/Src/MDANSE/Framework/Jobs/__init__.py b/MDANSE/Src/Framework/Jobs/__init__.py → MDANSE/Src/MDANSE/Framework/Jobs/__init__.py
diff --git a/...mework/OutputVariables/IOutputVariable.py → ...mework/OutputVariables/IOutputVariable.py b/...mework/OutputVariables/IOutputVariable.py → ...mework/OutputVariables/IOutputVariable.py
diff --git a/...ork/OutputVariables/LineOutputVariable.py → ...ork/OutputVariables/LineOutputVariable.py b/...ork/OutputVariables/LineOutputVariable.py → ...ork/OutputVariables/LineOutputVariable.py
diff --git a/.../OutputVariables/SurfaceOutputVariable.py → .../OutputVariables/SurfaceOutputVariable.py b/.../OutputVariables/SurfaceOutputVariable.py → .../OutputVariables/SurfaceOutputVariable.py
diff --git a/...k/OutputVariables/VolumeOutputVariable.py → ...k/OutputVariables/VolumeOutputVariable.py b/...k/OutputVariables/VolumeOutputVariable.py → ...k/OutputVariables/VolumeOutputVariable.py
diff --git a/...Src/Framework/OutputVariables/__init__.py → ...NSE/Framework/OutputVariables/__init__.py b/...Src/Framework/OutputVariables/__init__.py → ...NSE/Framework/OutputVariables/__init__.py
diff --git a/...rc/Framework/Projectors/AxialProjector.py → ...SE/Framework/Projectors/AxialProjector.py b/...rc/Framework/Projectors/AxialProjector.py → ...SE/Framework/Projectors/AxialProjector.py
diff --git a/...SE/Src/Framework/Projectors/IProjector.py → ...MDANSE/Framework/Projectors/IProjector.py b/...SE/Src/Framework/Projectors/IProjector.py → ...MDANSE/Framework/Projectors/IProjector.py
diff --git a/...Src/Framework/Projectors/NullProjector.py → ...NSE/Framework/Projectors/NullProjector.py b/...Src/Framework/Projectors/NullProjector.py → ...NSE/Framework/Projectors/NullProjector.py
diff --git a/...c/Framework/Projectors/PlanarProjector.py → ...E/Framework/Projectors/PlanarProjector.py b/...c/Framework/Projectors/PlanarProjector.py → ...E/Framework/Projectors/PlanarProjector.py
diff --git a/MDANSE/Src/Framework/Projectors/__init__.py → ...c/MDANSE/Framework/Projectors/__init__.py b/MDANSE/Src/Framework/Projectors/__init__.py → ...c/MDANSE/Framework/Projectors/__init__.py
diff --git a/...QVectors/ApproximateDispersionQVectors.py → ...QVectors/ApproximateDispersionQVectors.py b/...QVectors/ApproximateDispersionQVectors.py → ...QVectors/ApproximateDispersionQVectors.py
diff --git a/...ework/QVectors/CircularLatticeQVectors.py → ...ework/QVectors/CircularLatticeQVectors.py b/...ework/QVectors/CircularLatticeQVectors.py → ...ework/QVectors/CircularLatticeQVectors.py
diff --git a/...rc/Framework/QVectors/CircularQVectors.py → ...SE/Framework/QVectors/CircularQVectors.py b/...rc/Framework/QVectors/CircularQVectors.py → ...SE/Framework/QVectors/CircularQVectors.py
diff --git a/...ork/QVectors/DispersionLatticeQVectors.py → ...ork/QVectors/DispersionLatticeQVectors.py b/...ork/QVectors/DispersionLatticeQVectors.py → ...ork/QVectors/DispersionLatticeQVectors.py
diff --git a/...SE/Src/Framework/QVectors/GridQVectors.py → ...MDANSE/Framework/QVectors/GridQVectors.py b/...SE/Src/Framework/QVectors/GridQVectors.py → ...MDANSE/Framework/QVectors/GridQVectors.py
diff --git a/MDANSE/Src/Framework/QVectors/IQVectors.py → ...rc/MDANSE/Framework/QVectors/IQVectors.py b/MDANSE/Src/Framework/QVectors/IQVectors.py → ...rc/MDANSE/Framework/QVectors/IQVectors.py
diff --git a/...Src/Framework/QVectors/LatticeQVectors.py → ...NSE/Framework/QVectors/LatticeQVectors.py b/...Src/Framework/QVectors/LatticeQVectors.py → ...NSE/Framework/QVectors/LatticeQVectors.py
diff --git a/...amework/QVectors/LinearLatticeQVectors.py → ...amework/QVectors/LinearLatticeQVectors.py b/...amework/QVectors/LinearLatticeQVectors.py → ...amework/QVectors/LinearLatticeQVectors.py
diff --git a/.../Src/Framework/QVectors/LinearQVectors.py → ...ANSE/Framework/QVectors/LinearQVectors.py b/.../Src/Framework/QVectors/LinearQVectors.py → ...ANSE/Framework/QVectors/LinearQVectors.py
diff --git a/...amework/QVectors/MillerIndicesQVectors.py → ...amework/QVectors/MillerIndicesQVectors.py b/...amework/QVectors/MillerIndicesQVectors.py → ...amework/QVectors/MillerIndicesQVectors.py
diff --git a/...work/QVectors/SphericalLatticeQVectors.py → ...work/QVectors/SphericalLatticeQVectors.py b/...work/QVectors/SphericalLatticeQVectors.py → ...work/QVectors/SphericalLatticeQVectors.py
diff --git a/...c/Framework/QVectors/SphericalQVectors.py → ...E/Framework/QVectors/SphericalQVectors.py b/...c/Framework/QVectors/SphericalQVectors.py → ...E/Framework/QVectors/SphericalQVectors.py
diff --git a/MDANSE/Src/Framework/QVectors/__init__.py → ...Src/MDANSE/Framework/QVectors/__init__.py b/MDANSE/Src/Framework/QVectors/__init__.py → ...Src/MDANSE/Framework/QVectors/__init__.py
diff --git a/MDANSE/Src/Framework/Selectors/All.py → MDANSE/Src/MDANSE/Framework/Selectors/All.py b/MDANSE/Src/Framework/Selectors/All.py → MDANSE/Src/MDANSE/Framework/Selectors/All.py
diff --git a/MDANSE/Src/Framework/Selectors/Amine.py → ...E/Src/MDANSE/Framework/Selectors/Amine.py b/MDANSE/Src/Framework/Selectors/Amine.py → ...E/Src/MDANSE/Framework/Selectors/Amine.py
diff --git a/MDANSE/Src/Framework/Selectors/Ammonium.py → ...rc/MDANSE/Framework/Selectors/Ammonium.py b/MDANSE/Src/Framework/Selectors/Ammonium.py → ...rc/MDANSE/Framework/Selectors/Ammonium.py
diff --git a/...SE/Src/Framework/Selectors/AtomElement.py → ...MDANSE/Framework/Selectors/AtomElement.py b/...SE/Src/Framework/Selectors/AtomElement.py → ...MDANSE/Framework/Selectors/AtomElement.py
diff --git a/...E/Src/Framework/Selectors/AtomFullName.py → ...DANSE/Framework/Selectors/AtomFullName.py b/...E/Src/Framework/Selectors/AtomFullName.py → ...DANSE/Framework/Selectors/AtomFullName.py
diff --git a/MDANSE/Src/Framework/Selectors/AtomIndex.py → ...c/MDANSE/Framework/Selectors/AtomIndex.py b/MDANSE/Src/Framework/Selectors/AtomIndex.py → ...c/MDANSE/Framework/Selectors/AtomIndex.py
diff --git a/MDANSE/Src/Framework/Selectors/AtomName.py → ...rc/MDANSE/Framework/Selectors/AtomName.py b/MDANSE/Src/Framework/Selectors/AtomName.py → ...rc/MDANSE/Framework/Selectors/AtomName.py
diff --git a/MDANSE/Src/Framework/Selectors/AtomPicked.py → .../MDANSE/Framework/Selectors/AtomPicked.py b/MDANSE/Src/Framework/Selectors/AtomPicked.py → .../MDANSE/Framework/Selectors/AtomPicked.py
diff --git a/MDANSE/Src/Framework/Selectors/AtomSymbol.py → .../MDANSE/Framework/Selectors/AtomSymbol.py b/MDANSE/Src/Framework/Selectors/AtomSymbol.py → .../MDANSE/Framework/Selectors/AtomSymbol.py
diff --git a/MDANSE/Src/Framework/Selectors/Backbone.py → ...rc/MDANSE/Framework/Selectors/Backbone.py b/MDANSE/Src/Framework/Selectors/Backbone.py → ...rc/MDANSE/Framework/Selectors/Backbone.py
diff --git a/.../Src/Framework/Selectors/CarboHydrogen.py → ...ANSE/Framework/Selectors/CarboHydrogen.py b/.../Src/Framework/Selectors/CarboHydrogen.py → ...ANSE/Framework/Selectors/CarboHydrogen.py
diff --git a/...SE/Src/Framework/Selectors/CarbonAlpha.py → ...MDANSE/Framework/Selectors/CarbonAlpha.py b/...SE/Src/Framework/Selectors/CarbonAlpha.py → ...MDANSE/Framework/Selectors/CarbonAlpha.py
diff --git a/MDANSE/Src/Framework/Selectors/ChainName.py → ...c/MDANSE/Framework/Selectors/ChainName.py b/MDANSE/Src/Framework/Selectors/ChainName.py → ...c/MDANSE/Framework/Selectors/ChainName.py
diff --git a/...Src/Framework/Selectors/HeteroHydrogen.py → ...NSE/Framework/Selectors/HeteroHydrogen.py b/...Src/Framework/Selectors/HeteroHydrogen.py → ...NSE/Framework/Selectors/HeteroHydrogen.py
diff --git a/MDANSE/Src/Framework/Selectors/Hydroxyl.py → ...rc/MDANSE/Framework/Selectors/Hydroxyl.py b/MDANSE/Src/Framework/Selectors/Hydroxyl.py → ...rc/MDANSE/Framework/Selectors/Hydroxyl.py
diff --git a/MDANSE/Src/Framework/Selectors/ISelector.py → ...c/MDANSE/Framework/Selectors/ISelector.py b/MDANSE/Src/Framework/Selectors/ISelector.py → ...c/MDANSE/Framework/Selectors/ISelector.py
diff --git a/.../Src/Framework/Selectors/Macromolecule.py → ...ANSE/Framework/Selectors/Macromolecule.py b/.../Src/Framework/Selectors/Macromolecule.py → ...ANSE/Framework/Selectors/Macromolecule.py
diff --git a/MDANSE/Src/Framework/Selectors/Methyl.py → .../Src/MDANSE/Framework/Selectors/Methyl.py b/MDANSE/Src/Framework/Selectors/Methyl.py → .../Src/MDANSE/Framework/Selectors/Methyl.py
diff --git a/.../Src/Framework/Selectors/MoleculeIndex.py → ...ANSE/Framework/Selectors/MoleculeIndex.py b/.../Src/Framework/Selectors/MoleculeIndex.py → ...ANSE/Framework/Selectors/MoleculeIndex.py
diff --git a/...E/Src/Framework/Selectors/MoleculeName.py → ...DANSE/Framework/Selectors/MoleculeName.py b/...E/Src/Framework/Selectors/MoleculeName.py → ...DANSE/Framework/Selectors/MoleculeName.py
diff --git a/.../Src/Framework/Selectors/NitroHydrogen.py → ...ANSE/Framework/Selectors/NitroHydrogen.py b/.../Src/Framework/Selectors/NitroHydrogen.py → ...ANSE/Framework/Selectors/NitroHydrogen.py
diff --git a/...Src/Framework/Selectors/NucleotideBase.py → ...NSE/Framework/Selectors/NucleotideBase.py b/...Src/Framework/Selectors/NucleotideBase.py → ...NSE/Framework/Selectors/NucleotideBase.py
diff --git a/...Src/Framework/Selectors/NucleotideName.py → ...NSE/Framework/Selectors/NucleotideName.py b/...Src/Framework/Selectors/NucleotideName.py → ...NSE/Framework/Selectors/NucleotideName.py
diff --git a/...rc/Framework/Selectors/NucleotideSugar.py → ...SE/Framework/Selectors/NucleotideSugar.py b/...rc/Framework/Selectors/NucleotideSugar.py → ...SE/Framework/Selectors/NucleotideSugar.py
diff --git a/...Src/Framework/Selectors/NucleotideType.py → ...NSE/Framework/Selectors/NucleotideType.py b/...Src/Framework/Selectors/NucleotideType.py → ...NSE/Framework/Selectors/NucleotideType.py
diff --git a/...SE/Src/Framework/Selectors/OxyHydrogen.py → ...MDANSE/Framework/Selectors/OxyHydrogen.py b/...SE/Src/Framework/Selectors/OxyHydrogen.py → ...MDANSE/Framework/Selectors/OxyHydrogen.py
diff --git a/MDANSE/Src/Framework/Selectors/Peptide.py → ...Src/MDANSE/Framework/Selectors/Peptide.py b/MDANSE/Src/Framework/Selectors/Peptide.py → ...Src/MDANSE/Framework/Selectors/Peptide.py
diff --git a/MDANSE/Src/Framework/Selectors/Phosphate.py → ...c/MDANSE/Framework/Selectors/Phosphate.py b/MDANSE/Src/Framework/Selectors/Phosphate.py → ...c/MDANSE/Framework/Selectors/Phosphate.py
diff --git a/...E/Src/Framework/Selectors/PythonScript.py → ...DANSE/Framework/Selectors/PythonScript.py b/...E/Src/Framework/Selectors/PythonScript.py → ...DANSE/Framework/Selectors/PythonScript.py
diff --git a/...E/Src/Framework/Selectors/ResidueClass.py → ...DANSE/Framework/Selectors/ResidueClass.py b/...E/Src/Framework/Selectors/ResidueClass.py → ...DANSE/Framework/Selectors/ResidueClass.py
diff --git a/...SE/Src/Framework/Selectors/ResidueName.py → ...MDANSE/Framework/Selectors/ResidueName.py b/...SE/Src/Framework/Selectors/ResidueName.py → ...MDANSE/Framework/Selectors/ResidueName.py
diff --git a/...SE/Src/Framework/Selectors/ResidueType.py → ...MDANSE/Framework/Selectors/ResidueType.py b/...SE/Src/Framework/Selectors/ResidueType.py → ...MDANSE/Framework/Selectors/ResidueType.py
diff --git a/MDANSE/Src/Framework/Selectors/SideChain.py → ...c/MDANSE/Framework/Selectors/SideChain.py b/MDANSE/Src/Framework/Selectors/SideChain.py → ...c/MDANSE/Framework/Selectors/SideChain.py
diff --git a/MDANSE/Src/Framework/Selectors/Sulphate.py → ...rc/MDANSE/Framework/Selectors/Sulphate.py b/MDANSE/Src/Framework/Selectors/Sulphate.py → ...rc/MDANSE/Framework/Selectors/Sulphate.py
diff --git a/...rc/Framework/Selectors/SulphurHydrogen.py → ...SE/Framework/Selectors/SulphurHydrogen.py b/...rc/Framework/Selectors/SulphurHydrogen.py → ...SE/Framework/Selectors/SulphurHydrogen.py
diff --git a/MDANSE/Src/Framework/Selectors/Thiol.py → ...E/Src/MDANSE/Framework/Selectors/Thiol.py b/MDANSE/Src/Framework/Selectors/Thiol.py → ...E/Src/MDANSE/Framework/Selectors/Thiol.py
diff --git a/...SE/Src/Framework/Selectors/WithinShell.py → ...MDANSE/Framework/Selectors/WithinShell.py b/...SE/Src/Framework/Selectors/WithinShell.py → ...MDANSE/Framework/Selectors/WithinShell.py
diff --git a/MDANSE/Src/Framework/Selectors/__init__.py → ...rc/MDANSE/Framework/Selectors/__init__.py b/MDANSE/Src/Framework/Selectors/__init__.py → ...rc/MDANSE/Framework/Selectors/__init__.py
diff --git a/...E/Src/Framework/Session/CurrentSession.py → ...DANSE/Framework/Session/CurrentSession.py b/...E/Src/Framework/Session/CurrentSession.py → ...DANSE/Framework/Session/CurrentSession.py
diff --git a/MDANSE/Src/Framework/Status.py → MDANSE/Src/MDANSE/Framework/Status.py b/MDANSE/Src/Framework/Status.py → MDANSE/Src/MDANSE/Framework/Status.py
diff --git a/MDANSE/Src/Framework/Units.py → MDANSE/Src/MDANSE/Framework/Units.py b/MDANSE/Src/Framework/Units.py → MDANSE/Src/MDANSE/Framework/Units.py
diff --git a/MDANSE/Src/Framework/UserDefinitionStore.py → ...c/MDANSE/Framework/UserDefinitionStore.py b/MDANSE/Src/Framework/UserDefinitionStore.py → ...c/MDANSE/Framework/UserDefinitionStore.py
diff --git a/MDANSE/Src/Framework/__init__.py → MDANSE/Src/MDANSE/Framework/__init__.py b/MDANSE/Src/Framework/__init__.py → MDANSE/Src/MDANSE/Framework/__init__.py
diff --git a/MDANSE/Src/Framework/units.json → MDANSE/Src/MDANSE/Framework/units.json b/MDANSE/Src/Framework/units.json → MDANSE/Src/MDANSE/Framework/units.json
diff --git a/MDANSE/Src/IO/FortranFormat.py → MDANSE/Src/MDANSE/IO/FortranFormat.py b/MDANSE/Src/IO/FortranFormat.py → MDANSE/Src/MDANSE/IO/FortranFormat.py
diff --git a/MDANSE/Src/IO/HDF.py → MDANSE/Src/MDANSE/IO/HDF.py b/MDANSE/Src/IO/HDF.py → MDANSE/Src/MDANSE/IO/HDF.py
diff --git a/MDANSE/Src/IO/HDF5.py → MDANSE/Src/MDANSE/IO/HDF5.py b/MDANSE/Src/IO/HDF5.py → MDANSE/Src/MDANSE/IO/HDF5.py
diff --git a/MDANSE/Src/IO/IOUtils.py → MDANSE/Src/MDANSE/IO/IOUtils.py b/MDANSE/Src/IO/IOUtils.py → MDANSE/Src/MDANSE/IO/IOUtils.py
diff --git a/MDANSE/Src/IO/PDB.py → MDANSE/Src/MDANSE/IO/PDB.py b/MDANSE/Src/IO/PDB.py → MDANSE/Src/MDANSE/IO/PDB.py
diff --git a/MDANSE/Src/IO/PDBExportFilters.py → MDANSE/Src/MDANSE/IO/PDBExportFilters.py b/MDANSE/Src/IO/PDBExportFilters.py → MDANSE/Src/MDANSE/IO/PDBExportFilters.py
diff --git a/MDANSE/Src/IO/PDBReader.py → MDANSE/Src/MDANSE/IO/PDBReader.py b/MDANSE/Src/IO/PDBReader.py → MDANSE/Src/MDANSE/IO/PDBReader.py
diff --git a/MDANSE/Src/IO/PDBSpaceGroups.py → MDANSE/Src/MDANSE/IO/PDBSpaceGroups.py b/MDANSE/Src/IO/PDBSpaceGroups.py → MDANSE/Src/MDANSE/IO/PDBSpaceGroups.py
diff --git a/MDANSE/Src/IO/TextFile.py → MDANSE/Src/MDANSE/IO/TextFile.py b/MDANSE/Src/IO/TextFile.py → MDANSE/Src/MDANSE/IO/TextFile.py
diff --git a/MDANSE/Src/IO/XTDFile.py → MDANSE/Src/MDANSE/IO/XTDFile.py b/MDANSE/Src/IO/XTDFile.py → MDANSE/Src/MDANSE/IO/XTDFile.py
diff --git a/MDANSE/Src/IO/__init__.py → MDANSE/Src/MDANSE/IO/__init__.py b/MDANSE/Src/IO/__init__.py → MDANSE/Src/MDANSE/IO/__init__.py
diff --git a/MDANSE/Src/Logging/Formatters.py → MDANSE/Src/MDANSE/Logging/Formatters.py b/MDANSE/Src/Logging/Formatters.py → MDANSE/Src/MDANSE/Logging/Formatters.py
diff --git a/MDANSE/Src/Logging/Logger.py → MDANSE/Src/MDANSE/Logging/Logger.py b/MDANSE/Src/Logging/Logger.py → MDANSE/Src/MDANSE/Logging/Logger.py
diff --git a/MDANSE/Src/Logging/__init__.py → MDANSE/Src/MDANSE/Logging/__init__.py b/MDANSE/Src/Logging/__init__.py → MDANSE/Src/MDANSE/Logging/__init__.py
diff --git a/MDANSE/Src/Mathematics/Arithmetic.py → MDANSE/Src/MDANSE/Mathematics/Arithmetic.py b/MDANSE/Src/Mathematics/Arithmetic.py → MDANSE/Src/MDANSE/Mathematics/Arithmetic.py
diff --git a/MDANSE/Src/Mathematics/Geometry.py → MDANSE/Src/MDANSE/Mathematics/Geometry.py b/MDANSE/Src/Mathematics/Geometry.py → MDANSE/Src/MDANSE/Mathematics/Geometry.py
diff --git a/MDANSE/Src/Mathematics/Graph.py → MDANSE/Src/MDANSE/Mathematics/Graph.py b/MDANSE/Src/Mathematics/Graph.py → MDANSE/Src/MDANSE/Mathematics/Graph.py
diff --git a/MDANSE/Src/Mathematics/LinearAlgebra.py → ...E/Src/MDANSE/Mathematics/LinearAlgebra.py b/MDANSE/Src/Mathematics/LinearAlgebra.py → ...E/Src/MDANSE/Mathematics/LinearAlgebra.py
diff --git a/MDANSE/Src/Mathematics/Signal.py → MDANSE/Src/MDANSE/Mathematics/Signal.py b/MDANSE/Src/Mathematics/Signal.py → MDANSE/Src/MDANSE/Mathematics/Signal.py
diff --git a/MDANSE/Src/Mathematics/Transformation.py → .../Src/MDANSE/Mathematics/Transformation.py b/MDANSE/Src/Mathematics/Transformation.py → .../Src/MDANSE/Mathematics/Transformation.py
diff --git a/MDANSE/Src/Mathematics/__init__.py → MDANSE/Src/MDANSE/Mathematics/__init__.py b/MDANSE/Src/Mathematics/__init__.py → MDANSE/Src/MDANSE/Mathematics/__init__.py
diff --git a/MDANSE/Src/MolecularDynamics/Analysis.py → .../Src/MDANSE/MolecularDynamics/Analysis.py b/MDANSE/Src/MolecularDynamics/Analysis.py → .../Src/MDANSE/MolecularDynamics/Analysis.py
diff --git a/...SE/Src/MolecularDynamics/Configuration.py → ...MDANSE/MolecularDynamics/Configuration.py b/...SE/Src/MolecularDynamics/Configuration.py → ...MDANSE/MolecularDynamics/Configuration.py
diff --git a/MDANSE/Src/MolecularDynamics/Connectivity.py → .../MDANSE/MolecularDynamics/Connectivity.py b/MDANSE/Src/MolecularDynamics/Connectivity.py → .../MDANSE/MolecularDynamics/Connectivity.py
diff --git a/MDANSE/Src/MolecularDynamics/Trajectory.py → ...rc/MDANSE/MolecularDynamics/Trajectory.py b/MDANSE/Src/MolecularDynamics/Trajectory.py → ...rc/MDANSE/MolecularDynamics/Trajectory.py
diff --git a/.../Src/MolecularDynamics/TrajectoryUtils.py → ...ANSE/MolecularDynamics/TrajectoryUtils.py b/.../Src/MolecularDynamics/TrajectoryUtils.py → ...ANSE/MolecularDynamics/TrajectoryUtils.py
diff --git a/MDANSE/Src/MolecularDynamics/UnitCell.py → .../Src/MDANSE/MolecularDynamics/UnitCell.py b/MDANSE/Src/MolecularDynamics/UnitCell.py → .../Src/MDANSE/MolecularDynamics/UnitCell.py
diff --git a/MDANSE/Src/MolecularDynamics/__init__.py → .../Src/MDANSE/MolecularDynamics/__init__.py b/MDANSE/Src/MolecularDynamics/__init__.py → .../Src/MDANSE/MolecularDynamics/__init__.py
diff --git a/...c/NeutronInstruments/Coverage/Coverage.py → ...E/NeutronInstruments/Coverage/Coverage.py b/...c/NeutronInstruments/Coverage/Coverage.py → ...E/NeutronInstruments/Coverage/Coverage.py
diff --git a/...tronInstruments/Coverage/TotalCoverage.py → ...tronInstruments/Coverage/TotalCoverage.py b/...tronInstruments/Coverage/TotalCoverage.py → ...tronInstruments/Coverage/TotalCoverage.py
diff --git a/...c/NeutronInstruments/Coverage/__init__.py → ...E/NeutronInstruments/Coverage/__init__.py b/...c/NeutronInstruments/Coverage/__init__.py → ...E/NeutronInstruments/Coverage/__init__.py
diff --git a/...Src/NeutronInstruments/IdealInstrument.py → ...NSE/NeutronInstruments/IdealInstrument.py b/...Src/NeutronInstruments/IdealInstrument.py → ...NSE/NeutronInstruments/IdealInstrument.py
diff --git a/...c/NeutronInstruments/Method/NullMethod.py → ...E/NeutronInstruments/Method/NullMethod.py b/...c/NeutronInstruments/Method/NullMethod.py → ...E/NeutronInstruments/Method/NullMethod.py
diff --git a/...ronInstruments/Method/ScatteringMethod.py → ...ronInstruments/Method/ScatteringMethod.py b/...ronInstruments/Method/ScatteringMethod.py → ...ronInstruments/Method/ScatteringMethod.py
diff --git a/...utronInstruments/Method/TOFDiffraction.py → ...utronInstruments/Method/TOFDiffraction.py b/...utronInstruments/Method/TOFDiffraction.py → ...utronInstruments/Method/TOFDiffraction.py
diff --git a/...Src/NeutronInstruments/Method/__init__.py → ...NSE/NeutronInstruments/Method/__init__.py b/...Src/NeutronInstruments/Method/__init__.py → ...NSE/NeutronInstruments/Method/__init__.py
diff --git a/...c/NeutronInstruments/NeutronInstrument.py → ...E/NeutronInstruments/NeutronInstrument.py b/...c/NeutronInstruments/NeutronInstrument.py → ...E/NeutronInstruments/NeutronInstrument.py
diff --git a/...Instruments/Resolution/IdealResolution.py → ...Instruments/Resolution/IdealResolution.py b/...Instruments/Resolution/IdealResolution.py → ...Instruments/Resolution/IdealResolution.py
diff --git a/...utronInstruments/Resolution/Resolution.py → ...utronInstruments/Resolution/Resolution.py b/...utronInstruments/Resolution/Resolution.py → ...utronInstruments/Resolution/Resolution.py
diff --git a/...NeutronInstruments/Resolution/__init__.py → ...NeutronInstruments/Resolution/__init__.py b/...NeutronInstruments/Resolution/__init__.py → ...NeutronInstruments/Resolution/__init__.py
diff --git a/...utronInstruments/Spectrum/FlatSpectrum.py → ...utronInstruments/Spectrum/FlatSpectrum.py b/...utronInstruments/Spectrum/FlatSpectrum.py → ...utronInstruments/Spectrum/FlatSpectrum.py
diff --git a/...c/NeutronInstruments/Spectrum/Spectrum.py → ...E/NeutronInstruments/Spectrum/Spectrum.py b/...c/NeutronInstruments/Spectrum/Spectrum.py → ...E/NeutronInstruments/Spectrum/Spectrum.py
diff --git a/...c/NeutronInstruments/Spectrum/__init__.py → ...E/NeutronInstruments/Spectrum/__init__.py b/...c/NeutronInstruments/Spectrum/__init__.py → ...E/NeutronInstruments/Spectrum/__init__.py
diff --git a/MDANSE/Src/NeutronInstruments/__init__.py → ...Src/MDANSE/NeutronInstruments/__init__.py b/MDANSE/Src/NeutronInstruments/__init__.py → ...Src/MDANSE/NeutronInstruments/__init__.py
diff --git a/...Src/PyQtGUI/pygenplot/dialogs/__init__.py → MDANSE/Src/MDANSE/Scripts/__init__.py b/...Src/PyQtGUI/pygenplot/dialogs/__init__.py → MDANSE/Src/MDANSE/Scripts/__init__.py
diff --git a/MDANSE/Scripts/mdanse → MDANSE/Src/MDANSE/Scripts/mdanse.py b/MDANSE/Scripts/mdanse → MDANSE/Src/MDANSE/Scripts/mdanse.py
@@ -1,5 +1,3 @@
-#!/usr/bin/env python
-
 # **************************************************************************
 #
 # MDANSE: Molecular Dynamics Analysis for Neutron Scattering Experiments
@@ -384,7 +382,7 @@ def save_job_template(self, option, opt_str, value, parser):
             return
 
 
-if __name__ == "__main__":
+def main():
     from MDANSE.__pkginfo__ import __version__, __date__
 
     # Creates the option parser.
@@ -457,3 +455,7 @@ def save_job_template(self, option, opt_str, value, parser):
 
     # The command line is parsed.
     options, _ = parser.parse_args()
+
+
+if __name__ == "__main__":
+    main()
diff --git a/MDANSE/Scripts/mdanse_job → MDANSE/Src/MDANSE/Scripts/mdanse_job.py b/MDANSE/Scripts/mdanse_job → MDANSE/Src/MDANSE/Scripts/mdanse_job.py
@@ -1,5 +1,3 @@
-#!/usr/bin/env python
-
 # **************************************************************************
 #
 # MDANSE: Molecular Dynamics Analysis for Neutron Scattering Experiments
@@ -39,7 +37,7 @@ def parse_args():
     return args
 
 
-if __name__ == "__main__":
+def main():
     from MDANSE import REGISTRY
     from MDANSE.GUI.Apps import JobApp
 
@@ -60,3 +58,7 @@ def parse_args():
 
     app = JobApp(job, trajectory)
     app.MainLoop()
+
+
+if __name__ == "__main__":
+    main()
diff --git a/MDANSE/Src/__init__.py → MDANSE/Src/MDANSE/__init__.py b/MDANSE/Src/__init__.py → MDANSE/Src/MDANSE/__init__.py
diff --git a/MDANSE/Src/__pkginfo__.py → MDANSE/Src/MDANSE/__pkginfo__.py b/MDANSE/Src/__pkginfo__.py → MDANSE/Src/MDANSE/__pkginfo__.py
diff --git a/MDANSE/pyproject.toml b/MDANSE/pyproject.toml
@@ -45,7 +45,11 @@ documentation = "https://mdanse.readthedocs.io/en/latest/"
 repository = "https://github.com/ISISNeutronMuon/MDANSE"
 
 [tool.setuptools]
-package-dir = {"MDANSE" = "src"}
+package-dir = {"" = "src"}
+
+[project.scripts]
+mdanse = "MDANSE.Scripts.mdanse:main"
+mdanse_job = "MDANSE.Scripts.mdanse_job:main"
 
 # [tool.setuptools.packages.find]
 # where = ["src"]
diff --git a/MDANSE/setup.py b/MDANSE/setup.py
@@ -1,19 +1,15 @@
 import fnmatch
 import glob
 import os
-import subprocess
 import sys
 
 import numpy
 
-from setuptools import setup, Extension
+from setuptools import setup, Extension, find_packages
 from Cython.Distutils import build_ext as cython_build_ext
 
 from pip._internal.req import parse_requirements
 from pip._internal.network.session import PipSession
-from distutils.command.build import build
-
-# from distutils.core import setup, Extension
 from distutils.sysconfig import get_config_vars
 from distutils.util import convert_path
 
@@ -73,19 +69,6 @@ def is_package(path):
     return os.path.isdir(path) and os.path.isfile(os.path.join(path, "__init__.py"))
 
 
-def find_packages(path, base=None, exclude=None):
-    packages = []
-
-    for root, dirs, files in os.walk(path):
-        if "__init__.py" in files:
-            if base is not None:
-                root = root.replace(path, base)
-            package = root.replace(os.sep, ".")
-            packages.append(package)
-
-    return packages
-
-
 def find_package_data(
     where=".",
     package="",
@@ -179,16 +162,8 @@ def find_data(
 #################################
 
 PACKAGE_INFO = {}
-exec(open("Src/__pkginfo__.py", "r").read(), {}, PACKAGE_INFO)
-
-PACKAGES = find_packages(path="Src", base="MDANSE")
+exec(open("Src/MDANSE/__pkginfo__.py", "r").read(), {}, PACKAGE_INFO)
 
-#################################
-# Package data section
-#################################
-
-# Retrieve all the data related to the MDANSE package.
-PACKAGE_DATA = find_package_data(where="Src", package="MDANSE", show_ignored=False)
 
 #################################
 # User data section
@@ -197,12 +172,6 @@ def find_data(
 DATA_FILES = []
 DATA_FILES.extend(find_data("Doc", exclude=[], prefix="conf_"))
 
-#################################
-# Scripts section
-#################################
-
-SCRIPTS_PATH = "Scripts"
-SCRIPTS = glob.glob(os.path.join(SCRIPTS_PATH, "mdanse*"))
 
 #################################
 # Documentation
@@ -418,13 +387,11 @@ class mdanse_build_api(mdanse_build_doc):
     maintainer_email=PACKAGE_INFO["__maintainer_email__"],
     url=PACKAGE_INFO["__url__"],
     license=PACKAGE_INFO["__license__"],
-    packages=PACKAGES,
-    package_data=PACKAGE_DATA,
-    package_dir={"MDANSE": "Src"},
+    packages=find_packages("Src"),
+    package_dir={"": "Src"},
     data_files=DATA_FILES,
     platforms=["Unix", "Windows"],
     ext_modules=EXTENSIONS,
-    scripts=SCRIPTS,
     cmdclass=CMDCLASS,
     # entry_points     = {"console_scripts": []}
     install_requires=[

diff --git a/MDANSE_GUI/MANIFEST.in b/MDANSE_GUI/MANIFEST.in
@@ -1,13 +1,10 @@
 include LICENSE
-include LICENCE
+include requirements.txt
 
-recursive-include Src/GUI/Resources/Icons *.png
-
-recursive-include Src/PyQtGUI/Icons *.png
+recursive-include Src/MDANSE_GUI/GUI/Resources/Icons *.png
+recursive-include Src/MDANSE_GUI/PyQtGUI/Icons *.png
+recursive-include Src/MDANSE_GUI/PyQtGUI/MolecularViewer/database *.yml
 
 recursive-include Doc *
 
-include Scripts/*
-
 recursive-include Tests *.py
-
diff --git a/MDANSE_GUI/Src/GUI/Apps.py → MDANSE_GUI/Src/MDANSE_GUI/GUI/Apps.py b/MDANSE_GUI/Src/GUI/Apps.py → MDANSE_GUI/Src/MDANSE_GUI/GUI/Apps.py
diff --git a/...GUI/Src/GUI/ComboWidgets/ComboCheckbox.py → ...NSE_GUI/GUI/ComboWidgets/ComboCheckbox.py b/...GUI/Src/GUI/ComboWidgets/ComboCheckbox.py → ...NSE_GUI/GUI/ComboWidgets/ComboCheckbox.py
diff --git a/...rc/GUI/ComboWidgets/ConfigurationPanel.py → ...UI/GUI/ComboWidgets/ConfigurationPanel.py b/...rc/GUI/ComboWidgets/ConfigurationPanel.py → ...UI/GUI/ComboWidgets/ConfigurationPanel.py
diff --git a/..._GUI/Src/GUI/ComboWidgets/JobHelpFrame.py → ...ANSE_GUI/GUI/ComboWidgets/JobHelpFrame.py b/..._GUI/Src/GUI/ComboWidgets/JobHelpFrame.py → ...ANSE_GUI/GUI/ComboWidgets/JobHelpFrame.py
diff --git a/...E_GUI/Src/GUI/ComboWidgets/ProgressBar.py → ...DANSE_GUI/GUI/ComboWidgets/ProgressBar.py b/...E_GUI/Src/GUI/ComboWidgets/ProgressBar.py → ...DANSE_GUI/GUI/ComboWidgets/ProgressBar.py
diff --git a/MDANSE_GUI/Src/GUI/ComboWidgets/__init__.py → ...c/MDANSE_GUI/GUI/ComboWidgets/__init__.py b/MDANSE_GUI/Src/GUI/ComboWidgets/__init__.py → ...c/MDANSE_GUI/GUI/ComboWidgets/__init__.py
diff --git a/MDANSE_GUI/Src/GUI/ControllerPanel.py → ...GUI/Src/MDANSE_GUI/GUI/ControllerPanel.py b/MDANSE_GUI/Src/GUI/ControllerPanel.py → ...GUI/Src/MDANSE_GUI/GUI/ControllerPanel.py
diff --git a/MDANSE_GUI/Src/GUI/DataController.py → ..._GUI/Src/MDANSE_GUI/GUI/DataController.py b/MDANSE_GUI/Src/GUI/DataController.py → ..._GUI/Src/MDANSE_GUI/GUI/DataController.py
diff --git a/MDANSE_GUI/Src/GUI/DataTreePanel.py → ...E_GUI/Src/MDANSE_GUI/GUI/DataTreePanel.py b/MDANSE_GUI/Src/GUI/DataTreePanel.py → ...E_GUI/Src/MDANSE_GUI/GUI/DataTreePanel.py
diff --git a/MDANSE_GUI/Src/GUI/ElementsDatabaseEditor.py → .../MDANSE_GUI/GUI/ElementsDatabaseEditor.py b/MDANSE_GUI/Src/GUI/ElementsDatabaseEditor.py → .../MDANSE_GUI/GUI/ElementsDatabaseEditor.py
diff --git a/..._GUI/Src/GUI/Events/JobControllerEvent.py → ...ANSE_GUI/GUI/Events/JobControllerEvent.py b/..._GUI/Src/GUI/Events/JobControllerEvent.py → ...ANSE_GUI/GUI/Events/JobControllerEvent.py
diff --git a/MDANSE_GUI/Src/GUI/Events/__init__.py → ...GUI/Src/MDANSE_GUI/GUI/Events/__init__.py b/MDANSE_GUI/Src/GUI/Events/__init__.py → ...GUI/Src/MDANSE_GUI/GUI/Events/__init__.py
diff --git a/...SE_GUI/Src/GUI/Handlers/ConsoleHandler.py → ...MDANSE_GUI/GUI/Handlers/ConsoleHandler.py b/...SE_GUI/Src/GUI/Handlers/ConsoleHandler.py → ...MDANSE_GUI/GUI/Handlers/ConsoleHandler.py
diff --git a/MDANSE_GUI/Src/GUI/Handlers/DialogHandler.py → .../MDANSE_GUI/GUI/Handlers/DialogHandler.py b/MDANSE_GUI/Src/GUI/Handlers/DialogHandler.py → .../MDANSE_GUI/GUI/Handlers/DialogHandler.py
diff --git a/MDANSE_GUI/Src/GUI/Handlers/__init__.py → ...I/Src/MDANSE_GUI/GUI/Handlers/__init__.py b/MDANSE_GUI/Src/GUI/Handlers/__init__.py → ...I/Src/MDANSE_GUI/GUI/Handlers/__init__.py
diff --git a/MDANSE_GUI/Src/GUI/Icons/__init__.py → ..._GUI/Src/MDANSE_GUI/GUI/Icons/__init__.py b/MDANSE_GUI/Src/GUI/Icons/__init__.py → ..._GUI/Src/MDANSE_GUI/GUI/Icons/__init__.py
diff --git a/MDANSE_GUI/Src/GUI/Icons/about.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/about.png b/MDANSE_GUI/Src/GUI/Icons/about.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/about.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/api.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/api.png b/MDANSE_GUI/Src/GUI/Icons/api.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/api.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/atom.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/atom.png b/MDANSE_GUI/Src/GUI/Icons/atom.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/atom.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/bug.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/bug.png b/MDANSE_GUI/Src/GUI/Icons/bug.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/bug.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/clock.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/clock.png b/MDANSE_GUI/Src/GUI/Icons/clock.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/clock.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/element.png → ..._GUI/Src/MDANSE_GUI/GUI/Icons/element.png b/MDANSE_GUI/Src/GUI/Icons/element.png → ..._GUI/Src/MDANSE_GUI/GUI/Icons/element.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/empty_data.png → ...I/Src/MDANSE_GUI/GUI/Icons/empty_data.png b/MDANSE_GUI/Src/GUI/Icons/empty_data.png → ...I/Src/MDANSE_GUI/GUI/Icons/empty_data.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/first.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/first.png b/MDANSE_GUI/Src/GUI/Icons/first.png → ...SE_GUI/Src/MDANSE_GUI/GUI/Icons/first.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/help.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/help.png b/MDANSE_GUI/Src/GUI/Icons/help.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/help.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/hourglass.png → ...UI/Src/MDANSE_GUI/GUI/Icons/hourglass.png b/MDANSE_GUI/Src/GUI/Icons/hourglass.png → ...UI/Src/MDANSE_GUI/GUI/Icons/hourglass.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/last.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/last.png b/MDANSE_GUI/Src/GUI/Icons/last.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/last.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/load.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/load.png b/MDANSE_GUI/Src/GUI/Icons/load.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/load.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/log.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/log.png b/MDANSE_GUI/Src/GUI/Icons/log.png → MDANSE_GUI/Src/MDANSE_GUI/GUI/Icons/log.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/logfile.png → ..._GUI/Src/MDANSE_GUI/GUI/Icons/logfile.png b/MDANSE_GUI/Src/GUI/Icons/logfile.png → ..._GUI/Src/MDANSE_GUI/GUI/Icons/logfile.png
diff --git a/MDANSE_GUI/Src/GUI/Icons/mdanse.icns → ..._GUI/Src/MDANSE_GUI/GUI/Icons/mdanse.icns b/MDANSE_GUI/Src/GUI/Icons/mdanse.icns → ..._GUI/Src/MDANSE_GUI/GUI/Icons/mdanse.icns