Release 0.3.0 (#65)

* update copyright year to 2023 * bump version * update install guide
INM-6 · Feb 24, 2023 · 5128a36 · 5128a36
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diff --git a/LICENSE.txt b/LICENSE.txt
@@ -1,4 +1,4 @@
-Copyright (c) 2017-2022, Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich
+Copyright (c) 2017-2023, Institute of Neuroscience and Medicine (INM-6), Forschungszentrum Jülich
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without

diff --git a/README.md b/README.md
@@ -23,7 +23,7 @@ https://viziphant.readthedocs.io/en/latest/
 For instructions on installing Viziphant, please see https://viziphant.readthedocs.io/en/latest/install.html
 
 #### Copyright
-:copyright: 2017-2022 by the [Viziphant team](doc/authors.rst).
+:copyright: 2017-2023 by the [Viziphant team](doc/authors.rst).
 
 #### License
 BSD 3-Clause License, see [LICENSE.txt](LICENSE.txt) for details.

diff --git a/doc/release_notes.rst b/doc/release_notes.rst
@@ -2,6 +2,38 @@
 Release Notes
 =============
 
+Viziphant 0.3.0 release notes
+*****************************
+
+Documentation
+-------------
+* Fixed math display for equations in docs by using mathjax as renderer #59
+* Remove title "Viziphant" from navigation bar #60
+* Fix documentation, remove version cap on sphinxcontrib-bibtex, add new citation style   #57
+* Fix navigation bar not showing up in documentation #64
+
+New functionality and features
+------------------------------
+* Add parameter to exclude labels from plotting in add_event function. #50
+* Add limit check to add_event function to prevent labels outside bounds of figure. #49
+* GPFA function plot_dimensions_vs_time passing neo.Events to the plotting function to make it more robust and flexible #52
+
+Bug fixes
+---------
+* Fix bug in add_events where only the last event was plotted. #53
+* Fix bug with newer versions of matplotlib by replacing gca() with add_subplot(). #56
+
+Miscellaneous
+-------------
+* CI: update GitHub actions commands, remove deprecated commands  #58
+* Add first unit test for ASSET plot_synchronous_events #63
+
+Selected dependency changes
+---------------------------
+* Update python version, drop support for python 3.6 and 3.7 #51 #62
+* Update to quantities >0.14.0 #61
+
+
 Viziphant 0.2.0 release notes
 *****************************
 

diff --git a/viziphant/VERSION b/viziphant/VERSION
@@ -1 +1 @@
-0.2.0
+0.3.0
diff --git a/viziphant/__init__.py b/viziphant/__init__.py
@@ -3,7 +3,7 @@
 Elephant, which is a package for the analysis of neurophysiological data,
 based on Neo.
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 from . import (asset, events, gpfa, patterns, rasterplot,

diff --git a/viziphant/asset.py b/viziphant/asset.py
@@ -9,7 +9,7 @@
     plot_synchronous_events
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 

diff --git a/viziphant/events.py b/viziphant/events.py
@@ -8,7 +8,7 @@
     add_event
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt.txt for details.
 
 
@@ -71,7 +71,7 @@ def add_event(axes, event, key=None, rotation=40, exclude=None):
     x_lim_min, x_lim_max = axes[-1].get_xlim()
     if x_lim_max < x_lim_min:
         x_lim_min, x_lim_max = x_lim_max, x_lim_min
-            
+
     if exclude is None:
         exclude = []
 

diff --git a/viziphant/gpfa.py b/viziphant/gpfa.py
@@ -14,7 +14,7 @@
     plot_cumulative_shared_covariance
     plot_transform_matrix
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 import itertools

diff --git a/viziphant/patterns.py b/viziphant/patterns.py
@@ -24,7 +24,7 @@
     plot_patterns_statistics_lags
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 from collections import defaultdict
@@ -169,7 +169,7 @@ def plot_patterns_statistics_lags(patterns, axes=None):
     """
     if axes is None:
         fig, axes = plt.subplots()
-    
+
     # 'times' and 'lags' share the same units;
     # however, only lag units are of interest
     units = patterns[0]['lags'].units

diff --git a/viziphant/rasterplot.py b/viziphant/rasterplot.py
@@ -10,7 +10,7 @@
     rasterplot_rates
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 import matplotlib.axes

diff --git a/viziphant/spike_train_correlation.py b/viziphant/spike_train_correlation.py
@@ -9,7 +9,7 @@
     plot_cross_correlation_histogram
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt.txt for details.
 
 

diff --git a/viziphant/spike_train_synchrony.py b/viziphant/spike_train_synchrony.py
@@ -8,7 +8,7 @@
     plot_spike_contrast
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 import matplotlib.pyplot as plt

diff --git a/viziphant/statistics.py b/viziphant/statistics.py
@@ -10,7 +10,7 @@
     plot_instantaneous_rates_colormesh
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt.txt for details.
 
 import matplotlib.pyplot as plt

diff --git a/viziphant/unitary_event_analysis.py b/viziphant/unitary_event_analysis.py
@@ -12,7 +12,7 @@
     plot_ue
 
 """
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt.txt for details.
 
 import numpy as np

diff --git a/viziphant/utils.py b/viziphant/utils.py
@@ -1,4 +1,4 @@
-# Copyright 2017-2022 by the Viziphant team, see `doc/authors.rst`.
+# Copyright 2017-2023 by the Viziphant team, see `doc/authors.rst`.
 # License: Modified BSD, see LICENSE.txt for details.
 
 from elephant.utils import check_same_units as check_same_units_single