Add codespell support: config, action (to detect new) + get some typos fixed

[yarikoptic]

No description provided.

[cmungall]

I approved the build and also invited you to the repo so this should not be necessary in future, thx!

[yarikoptic]

cool, thanks - accepted. new typos emerged since then, rebased, added an ignore on "infarctions" (not so common word) and reran.

[codecov-commenter]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (490a6ec) 76.34% compared to head (691607b) 75.89%.

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Additional details and impacted files

@@            Coverage Diff             @@
##             main     #671      +/-   ##
==========================================
- Coverage   76.34%   75.89%   -0.46%     
==========================================
  Files         256      256              
  Lines       29734    29734              
==========================================
- Hits        22701    22567     -134     
- Misses       7033     7167     +134     

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[cmungall]

I rebased, this introduced a new test file that fails spellchecks. I think in this scenario we want to exclude verbatim test examples like this

[yarikoptic]

I did before fixed up those

❯ git diff origin/main --stat -- ./tests/input
 tests/input/AMPK-Signaling.cx   |      2 +-
 tests/input/go-nucleus.owl      |      8 +-
 tests/input/ncbigene-1956.xml   | 635814 ++++++++++++++++++++++++++++++++
 tests/input/uniprot-P12345.json |   1898 +
 4 files changed, 637717 insertions(+), 5 deletions(-)

I can exclude them all -- I just wonder if that anyhow would effect tests -- that they would have corrected words while input files -- failed... let me redo that way and see if we hit such cases. Also I will fix a fresh typo in a notebook

[yarikoptic]

CI is green, so I guess ignoring the inputs, didn't cause some turmoil in the tests -- good