format

INCATools · Feb 11, 2025 · feba8d7 · feba8d7
1 parent 7a99c20
commit feba8d7
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Showing 2 changed files with 1 addition and 3 deletions.
diff --git a/src/oaklib/implementations/uniprot/uniprot_implementation.py b/src/oaklib/implementations/uniprot/uniprot_implementation.py
@@ -158,9 +158,7 @@ def relationships(
         :param include_entailed: TODO
         :return:
         """
-        from bioservices import UniProt
 
-        u = UniProt()
         exclude_predicates = [
             "up:mappedCitation",
             "up:mappedAnnotation",

diff --git a/src/oaklib/utilities/obograph_utils.py b/src/oaklib/utilities/obograph_utils.py
@@ -58,7 +58,7 @@ def graph_node_ids_from_subject_and_objects(g: Graph) -> List[CURIE]:
 def remove_unlabeled_nodes(g: Union[GraphDocument, Graph], rescue_connected_nodes=True) -> None:
     if isinstance(g, GraphDocument):
         for graph in g.graphs:
-            remove_unlabeled(graph, rescue_connected_nodes=rescue_connected_nodes)
+            remove_unlabeled_nodes(graph, rescue_connected_nodes=rescue_connected_nodes)
     else:
         if rescue_connected_nodes:
             rescued = graph_node_ids_from_subject_and_objects(g)