Using the Lightning CLI interface to run tests

.github/dependabot.yaml

@@ -0,0 +1,24 @@
+# https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+# mostly from https://github.com/microsoft/torchgeo/blob/main/.github/dependabot.yml
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "daily"
+    groups:
+      # torchvision pins torch, must update in unison
+      torch:
+        patterns:
+          - "torch"
+          - "torchvision"
+    ignore:
+      # setuptools releases new versions almost daily
+      - dependency-name: "setuptools"
+        update-types: ["version-update:semver-patch"]
+      # segmentation-models-pytorch pins timm, must update in unison
+      - dependency-name: "timm"

pyproject.toml

@@ -38,7 +38,8 @@ dependencies = [
   "h5py>=3.10.0",
   "geobench>=1.0.0",
   "mlflow>=2.12.1",
-  "lightning<=2.2.5"
+  # broken due to https://github.com/Lightning-AI/pytorch-lightning/issues/19977
+  "lightning>=2, <=2.2.5"
 ]
 
 [project.optional-dependencies]

requirements/required.txt

@@ -10,3 +10,4 @@ lightly==1.4.25
 h5py==3.10.0
 geobench==1.0.0
 mlflow==2.12.1
+lightning==2.2.5

tests/test_finetune.py

@@ -6,8 +6,7 @@
 import subprocess
 import os 
 
-from terratorch.models.backbones.prithvi_vit import checkpoint_filter_fn as checkpoint_filter_fn_vit
-from terratorch.models.backbones.prithvi_swin import checkpoint_filter_fn as checkpoint_filter_fn_swin
+from terratorch.cli_tools import build_lightning_cli
 
 @pytest.mark.parametrize("model_name", ["prithvi_swin_B", "prithvi_swin_L", "prithvi_vit_100", "prithvi_vit_300"])
 def test_finetune_multiple_backbones(model_name):
@@ -21,11 +20,24 @@ def test_finetune_multiple_backbones(model_name):
     torch.save(state_dict, os.path.join("tests/", model_name + ".pt"))
 
     # Running the terratorch CLI
-    command_str = f"terratorch fit -c tests/manufactured-finetune_{model_name}.yaml" 
+    command_list = ["fit", "-c", f"tests/manufactured-finetune_{model_name}.yaml"]
+    _ = build_lightning_cli(command_list)
 
-    command_out = subprocess.run(command_str, shell=True) 
+"""
+@pytest.mark.parametrize("model_name", ["prithvi_swin_B", "prithvi_swin_L", "prithvi_vit_100", "prithvi_vit_300"])
+def test_finetune_multiple_backbones(model_name):
 
-    assert not command_out.returncode
+    model_instance = timm.create_model(model_name)
+    pretrained_bands = [0, 1, 2, 3, 4, 5]
+    model_bands = [0, 1, 2, 3, 4, 5]
 
+    state_dict = model_instance.state_dict()
+
+    torch.save(state_dict, os.path.join("tests/", model_name + ".pt"))
 
+    # Running the terratorch CLI
+    command_str = f"python terratorch/__main__.py fit -c tests/manufactured-finetune_{model_name}.yaml"
+    command_out = subprocess.run(command_str, shell=True)
 
+    assert not command_out.returncode
+ """