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Fixed an issue with one of the header types that was causing IGV to
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DavidAustinNix authored and DavidAustinNix committed Feb 2, 2017
1 parent 710cfc8 commit a92301b
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion Source/edu/utah/seq/vcf/VCFBackgroundScanner.java
Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,7 @@ record = record.trim();
if (addInfo && record.startsWith("##INFO=")) {
vcfOut.println("##INFO=<ID=BKZ,Number=1,Type=Float,Description=\"Smallest AF z-score calculated from background AFs over effected bases. "
+ "Values < ~4 are suspicous, non reference observations are likely present in the background samples.\">");
vcfOut.println("##INFO=<ID=BKAF,Type=String,Description=\"Non-reference AFs from the background samples used to calculate the BKZ.\">");
vcfOut.println("##INFO=<ID=BKAF,Number=1,Type=String,Description=\"Non-reference AFs from the background samples used to calculate the BKZ.\">");
addInfo = false;
}
vcfOut.println(record);
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