Generate OWL file

HUPO-PSI · Apr 22, 2023 · 0ef4b17 · 0ef4b17
1 parent 97bde1a
commit 0ef4b17
Showing 1 changed file with 75 additions and 3 deletions.
diff --git a/psi-ms.owl b/psi-ms.owl
@@ -34,7 +34,7 @@
      xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
      xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.118/ms.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.119/ms.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
         <oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
@@ -1238,15 +1238,15 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1000033">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000543"/>
-        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.</obo:IAO_0000115>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent the ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.</obo:IAO_0000115>
         <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
         <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1000033</oboInOwl:id>
         <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">deisotoping</rdfs:label>
     </owl:Class>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1000033"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.</owl:annotatedTarget>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent the ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.</owl:annotatedTarget>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
     </owl:Axiom>
 
@@ -70056,6 +70056,78 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/MS_1003367 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003367">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000033"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s monoisotopic mass. It is done in conjunction with the charge state deconvolution.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003367</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">monoisotopic mass deisotoping</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003367"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s monoisotopic mass. It is done in conjunction with the charge state deconvolution.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003368 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003368">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000033"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s most abundant isotopic mass. It is done in conjunction with the charge state deconvolution.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003368</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">most abundant mass deisotoping</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003368"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s most abundant isotopic mass. It is done in conjunction with the charge state deconvolution.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003369 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003369">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000033"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s average mass. It is done in conjunction with the charge state deconvolution.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003369</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">average mass deisotoping</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003369"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The removal of isotope peaks to represent each ion as one data point corresponding to the ion&apos;s average mass. It is done in conjunction with the charge state deconvolution.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/MS_1003370 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003370">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1000543"/>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The summing of peaks corresponding to the same mass at multiple charge states and presented as singly charged m/z.</obo:IAO_0000115>
+        <oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
+        <oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003370</oboInOwl:id>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">reduction to summed singly charged peak list</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003370"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The summing of peaks corresponding to the same mass at multiple charge states and presented as singly charged m/z.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:MS</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/MS_4000000 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_4000000">