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Update OWL file (#208)
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Co-authored-by: GitHub <[email protected]>
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@mobiusklein @web-flow
mobiusklein and web-flow authored Jul 14, 2023
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Showing 1 changed file with 97 additions and 1 deletion.
98 changes: 97 additions & 1 deletion psi-ms.owl
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xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#"
xmlns:caloha-reqs-vetted="http://purl.obolibrary.org/obo/caloha-reqs-vetted#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ms.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.129/ms.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ms/4.1.130/ms.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/pato.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/stato.owl"/>
<oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* MS:$sequence(7,0,9999999)$</oboInOwl:NamespaceIdRule>
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<!-- http://purl.obolibrary.org/obo/MS_1003390 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003390">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001471"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_regexp"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/MS_1003391"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_string"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Signifies that the crosslinker is cleavable and on cleavage can leave a given stub. The pattern specifies three slots &lt;name&gt;:&lt;mass&gt;:&lt;pairs with&gt;.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003390</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crosslinker cleavage characteristics</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003390"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Signifies that the crosslinker is cleavable and on cleavage can leave a given stub. The pattern specifies three slots &lt;name&gt;:&lt;mass&gt;:&lt;pairs with&gt;.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/MS_1003391 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003391">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1002479"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">^(?&lt;NAME&gt;[A-Za-z]):(?&lt;MASS&gt;[+-]?[0-9]+(.[0-9]+)?([eE][+-]?[0-9]+(.[0-9]+)?)?):(?&lt;PAIRS_WITH&gt;[A-Za-z]+)$</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003391</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">crosslinker cleavage regular expression</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003391"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">^(?&lt;NAME&gt;[A-Za-z]):(?&lt;MASS&gt;[+-]?[0-9]+(.[0-9]+)?([eE][+-]?[0-9]+(.[0-9]+)?)?):(?&lt;PAIRS_WITH&gt;[A-Za-z]+)$</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/MS_1003392 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003392">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001471"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_string"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A unique identifier within an in mzIdentML document denoting a search modification rule. The same modification may be present multiple times with different id values to reflect different specificities or neutral losses.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003392</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">search modification id</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003392"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A unique identifier within an in mzIdentML document denoting a search modification rule. The same modification may be present multiple times with different id values to reflect different specificities or neutral losses.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/MS_1003393 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_1003393">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/MS_1001471"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/ms#has_value_type"/>
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/xsd_string"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reference to a `search modification id` in the current mzIdentML document that defines the properties of this modification instance.</obo:IAO_0000115>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MS:1003393</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">search modification id ref</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/MS_1003393"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A reference to a `search modification id` in the current mzIdentML document that defines the properties of this modification instance.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PSI:PI</oboInOwl:hasDbXref>
</owl:Axiom>



<!-- http://purl.obolibrary.org/obo/MS_4000000 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/MS_4000000">
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