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Use mirror for reference panel
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Official download link is offline, see genepi/imputationserver-docker#18
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HippocampusGirl committed Jan 25, 2024
1 parent fa27c9b commit 32ee97a
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -19,8 +19,8 @@ RUN mkdir -p -v /localdata/liftover && \
file_name="${genome_reference}ToHg19.over.chain.gz"; \
wget --progress=dot:mega -O "/localdata/liftover/${file_name}" "https://hgdownload.soe.ucsc.edu/goldenPath/${genome_reference}/liftOver/${file_name}"; \
done
RUN wget --progress=dot:mega -O "/localdata/imputationserver.zip" "https://github.com/genepi/imputationserver/releases/download/v1.7.4/imputationserver.zip" && \
wget --progress=dot:giga -O "/localdata/1000genomes-phase3.zip" "https://imputationserver.sph.umich.edu/static/downloads/releases/1000genomes-phase3-3.0.0.zip"
RUN wget --progress=dot:mega -O "/localdata/imputationserver.zip" "https://github.com/genepi/imputationserver/releases/download/v1.7.5/imputationserver.zip" && \
wget --progress=dot:giga -O "/localdata/1000genomes-phase3.zip" "https://download.gwas.science/imputationserver/1000genomes-phase3-3.0.0.zip"

FROM apache/hadoop:3
USER root
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