Add test data and build and remove pangolin from preprocessing

.gitignore

@@ -63,3 +63,8 @@ scripts/developer_scripts/outputs_new_sequences/
 
 # SLURM log files
 slurm-*.out
+auspice/ncov_belgium*
+scripts/data_manipulation/gisaid_meta_to_nextstrain/*.tsv
+scripts/data_manipulation/gisaid_meta_to_nextstrain/*.fasta
+scripts/data_manipulation/gisaid_meta_to_nextstrain/*.xlsx
+scripts/data_manipulation/gisaid_meta_to_nextstrain/archive/

.logs/partition_sequences.txt

@@ -0,0 +1,45 @@
+Write out 100 sequences for partition 0
+Write out 100 sequences for partition 1
+Write out 100 sequences for partition 2
+Write out 100 sequences for partition 3
+Write out 100 sequences for partition 4
+Write out 100 sequences for partition 5
+Write out 100 sequences for partition 6
+Write out 100 sequences for partition 7
+Write out 100 sequences for partition 8
+Write out 100 sequences for partition 9
+Write out 100 sequences for partition 10
+Write out 100 sequences for partition 11
+Write out 100 sequences for partition 12
+Write out 100 sequences for partition 13
+Write out 100 sequences for partition 14
+Write out 100 sequences for partition 15
+Write out 100 sequences for partition 16
+Write out 100 sequences for partition 17
+Write out 100 sequences for partition 18
+Write out 100 sequences for partition 19
+Write out 100 sequences for partition 20
+Write out 100 sequences for partition 21
+Write out 100 sequences for partition 22
+Write out 100 sequences for partition 23
+Write out 100 sequences for partition 24
+Write out 100 sequences for partition 25
+Write out 100 sequences for partition 26
+Write out 100 sequences for partition 27
+Write out 100 sequences for partition 28
+Write out 100 sequences for partition 29
+Write out 100 sequences for partition 30
+Write out 100 sequences for partition 31
+Write out 100 sequences for partition 32
+Write out 100 sequences for partition 33
+Write out 100 sequences for partition 34
+Write out 100 sequences for partition 35
+Write out 100 sequences for partition 36
+Write out 100 sequences for partition 37
+Write out 100 sequences for partition 38
+Write out 100 sequences for partition 39
+Write out 100 sequences for partition 40
+Write out 100 sequences for partition 41
+Write out 100 sequences for partition 42
+Write out 100 sequences for partition 43
+Write out 28 sequences for partition 44