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Bump large-image-source-vips from 1.17.2 to 1.27.1 #3905

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@dependabot dependabot bot commented on behalf of github Jan 29, 2024

Bumps large-image-source-vips from 1.17.2 to 1.27.1.

Release notes

Sourced from large-image-source-vips's releases.

Version 1.27.1

Improvements

  • Read config values from the environment variables (#1422)
  • Optimizing when reading arrays rather than images from tiff files (#1423)
  • Better filter DICOM adjacent files to ensure they share series instance IDs (#1424, #1436, #1442)
  • Optimizing small getRegion calls and some tiff tile fetches (#1427)
  • Started adding python types to the core library (#1432, #1433, #1437, #1438, #1439)
  • Use parallelism in computing tile frames (#1434)
  • Support downloading DICOMweb files (#1429)

Changes

  • Cleanup some places where get was needlessly used (#1428)
  • Moved some internal code out of the base class (#1429)
  • Handle changes to wsidicom (#1435)
  • Refactored the tile iterator to its own class (#1441)

Version 1.27.0

Features

  • Support affine transforms in the multi-source (#1415)

Improvements

  • Remove NaN values from band information (#1414)
  • Add a singleBand option to the multi-source specification (#1416)
  • Allow better detection of multiple file dicom (#1417)
  • Better missing data detection from tifffile (#1421)

Changes

  • Remove an unused parameter in a private method (#1419)

Version 1.26.3

Improvements

  • Reduce stderr noise in PIL and rasterio sources (#1397)
  • Harden OME tiff reader (#1398)
  • Improve checks for formats we shouldn't read (#1399)
  • Support negative x, y in addTile (#1401)
  • Add a utility function for getting loggers (#1403)
  • Get bioformats jar version if bioformats was started (#1405)
  • Improve thread safety of concurrent first reads using bioformats (#1406)
  • Read more metadata from DICOMweb (#1378)
  • Remove logic for determining DICOMweb transfer syntax (#1393)
  • Speed up tile output (#1407)
  • Speed up import time (#1408)
  • Speed up some tile iteration by reducing the chance of multiple image decodes (#1410)

Changes

  • Use an enum for priority constants (#1400)
  • Don't automatically flush memcached tile cache on exit (#1409)
  • Shift where netcdf information is reported (#1413)

Bug Fixes

... (truncated)

Changelog

Sourced from large-image-source-vips's changelog.

1.27.1

Improvements

  • Read config values from the environment variables (#1422)
  • Optimizing when reading arrays rather than images from tiff files (#1423)
  • Better filter DICOM adjacent files to ensure they share series instance IDs (#1424, #1436, #1442)
  • Optimizing small getRegion calls and some tiff tile fetches (#1427)
  • Started adding python types to the core library (#1432, #1433, #1437, #1438, #1439)
  • Use parallelism in computing tile frames (#1434)
  • Support downloading DICOMweb files (#1429)

Changes

  • Cleanup some places where get was needlessly used (#1428)
  • Moved some internal code out of the base class (#1429)
  • Handle changes to wsidicom (#1435)
  • Refactored the tile iterator to its own class (#1441)

1.27.0

Features

  • Support affine transforms in the multi-source (#1415)

Improvements

  • Remove NaN values from band information (#1414)
  • Add a singleBand option to the multi-source specification (#1416)
  • Allow better detection of multiple file dicom (#1417)
  • Better missing data detection from tifffile (#1421)

Changes

  • Remove an unused parameter in a private method (#1419)

1.26.3

Improvements

  • Reduce stderr noise in PIL and rasterio sources (#1397)
  • Harden OME tiff reader (#1398)
  • Improve checks for formats we shouldn't read (#1399)
  • Support negative x, y in addTile (#1401)
  • Add a utility function for getting loggers (#1403)
  • Get bioformats jar version if bioformats was started (#1405)
  • Improve thread safety of concurrent first reads using bioformats (#1406)
  • Read more metadata from DICOMweb (#1378)
  • Remove logic for determining DICOMweb transfer syntax (#1393)
  • Speed up tile output (#1407)
  • Speed up import time (#1408)
  • Speed up some tile iteration by reducing the chance of multiple image decodes (#1410)

Changes

  • Use an enum for priority constants (#1400)
  • Don't automatically flush memcached tile cache on exit (#1409)

... (truncated)

Commits
  • c7e130d Merge pull request #1443 from girder/pyupdate-dicom-adapter
  • 52e21ef Update a few lines based on pyupdate
  • e7fc510 Merge pull request #1440 from girder/dicomweb-dcm4chee-auth-tests
  • b02a177 Merge pull request #1442 from girder/dicom-multi-file-guard
  • 2e167db Don't scan as many files when checking for multi file dicom
  • 65eba30 Merge pull request #1441 from girder/tile-iterator-class
  • 247f711 Merge pull request #1429 from psavery/dicomweb-separate-files
  • 8797af6 Make the tile iterator a class.
  • 15476f6 Set file size to be "None"
  • cfe3947 Reduce the ending check size to be ending_size - 1
  • Additional commits viewable in compare view

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Bumps [large-image-source-vips](https://github.com/girder/large_image) from 1.17.2 to 1.27.1.
- [Release notes](https://github.com/girder/large_image/releases)
- [Changelog](https://github.com/girder/large_image/blob/master/CHANGELOG.md)
- [Commits](girder/large_image@v1.17.2...v1.27.1)

---
updated-dependencies:
- dependency-name: large-image-source-vips
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 29, 2024
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dependabot bot commented on behalf of github Feb 5, 2024

Superseded by #3925.

@dependabot dependabot bot closed this Feb 5, 2024
@dependabot dependabot bot deleted the dependabot/pip/large-image-source-vips-1.27.1 branch February 5, 2024 04:04
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