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Update README with Running on AIDE section
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tomaroberts committed Feb 15, 2023
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Expand Up @@ -111,3 +111,14 @@ Note: two containers are present under GitHub Packages:

The `map` version is for general usage and deployment. The `map-init` version is for developers who wish to build the
MAP from scratch as part of the two-step build process described above.

## Running on AIDE
To run TotalSegmentator on AIDE, two files from the `app/workflows` directory are required, namely:
- `totalsegmentator.json` – AIDE Clinical Workflow file.
- Effectively a sequence of tasks run on AIDE
- `totalsegmentator-argo-template.yaml` – Argo Workflow Template file.
- Called by the AIDE Clinical Workflow file. Executes the Totalsegmentator-AIDE MAP using Argo. This is the central
task within the AIDE Clinical Workflow file.

The `app/workflows` directory also contains four illustrative Argo Workflow Templates depending on system performance.
`low`, `medium`, `high` and `dgx` examples are provided with different CPU and RAM settings.

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