Modify tests, appears to be more reflective of reality

GMOD · Dec 11, 2024 · b7dd152 · b7dd152
1 parent 7e913f6
commit b7dd152
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Showing 3 changed files with 24 additions and 17 deletions.
diff --git a/src/bgzFilehandle.ts b/src/bgzFilehandle.ts
@@ -88,7 +88,7 @@ export default class BgzFilehandle {
       length,
       position,
     )
-    const block = [] as Uint8Array[]
+    const blocks = [] as Uint8Array[]
     for (
       let blockNum = 0;
       blockNum < blockPositions.length - 1;
@@ -107,11 +107,10 @@ export default class BgzFilehandle {
           uncompressedPosition + uncompressedBuffer.length,
         ) - uncompressedPosition
       if (sourceOffset >= 0 && sourceOffset < uncompressedBuffer.length) {
-        // uncompressedBuffer.copy(buf, destinationOffset, sourceOffset, sourceEnd)
-        block.push(uncompressedBuffer.subarray(sourceOffset, sourceEnd))
+        blocks.push(uncompressedBuffer.subarray(sourceOffset, sourceEnd))
       }
     }
 
-    return concatUint8Array(block)
+    return concatUint8Array(blocks)
   }
 }
diff --git a/src/unzip.ts b/src/unzip.ts
@@ -44,7 +44,7 @@ async function unzip(inputData: Uint8Array) {
       result.set(chunks[i]!, offset)
       offset += chunks[i]!.length
     }
-    return Buffer.from(result)
+    return result
   } catch (e) {
     //cleanup error message
     if (/incorrect header check/.exec(`${e}`)) {

diff --git a/test/indexedfile.test.ts b/test/indexedfile.test.ts
@@ -15,9 +15,9 @@ async function testRead(basename: string, length: number, position: number) {
   expect(buf.length).toEqual(buf2.length)
   expect(Array.from(buf)).toEqual(Array.from(buf2))
 
-  // const directStat = fs.fstatSync(fd)
-  // const myStat = await f.stat()
-  // expect(myStat.size).toEqual(directStat.size)
+  const directStat = fs.fstatSync(fd)
+  const myStat = await f.stat()
+  expect(myStat.size).toEqual(directStat.size)
 }
 
 test('can read gff3_with_syncs.gff3.gz 1', async () => {
@@ -34,12 +34,20 @@ test('can read gff3_with_syncs.gff3.gz 4', async () => {
   await testRead('gff3_with_syncs.gff3', 2500, 0)
 })
 test('can read gff3_with_syncs.gff3.gz 5', async () => {
-  await testRead('gff3_with_syncs.gff3', 3000, 1)
-})
-// test('can read T_ko.2bit', async () => {
-//   await testRead('T_ko.2bit', 10, 0)
-//   await testRead('T_ko.2bit', 10000, 20000)
-//   await testRead('T_ko.2bit', 10000, 1)
-//   await testRead('T_ko.2bit', 10, 0)
-//   await testRead('T_ko.2bit', 10, 1000000)
-// })
+  await testRead('gff3_with_syncs.gff3', 2545, 1)
+})
+test('can read T_ko.2bit 1', async () => {
+  await testRead('T_ko.2bit', 10, 0)
+})
+test('can read T_ko.2bit 2', async () => {
+  await testRead('T_ko.2bit', 10000, 20000)
+})
+test('can read T_ko.2bit 3', async () => {
+  await testRead('T_ko.2bit', 10000, 1)
+})
+test('can read T_ko.2bit 4', async () => {
+  await testRead('T_ko.2bit', 10, 0)
+})
+test('can read T_ko.2bit 5', async () => {
+  await testRead('T_ko.2bit', 0, 1000000)
+})