Misc

GMOD · Nov 30, 2024 · 47cbf3a · 47cbf3a
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diff --git a/README.md b/README.md
@@ -2,7 +2,7 @@
 [![Coverage Status](https://img.shields.io/codecov/c/github/GMOD/bgzf-filehandle/master.svg?style=flat-square)](https://codecov.io/gh/GMOD/bgzf-filehandle/branch/master)
 [![Build Status](https://img.shields.io/github/actions/workflow/status/GMOD/bgzf-filehandle/push.yml?branch=master)](https://github.com/GMOD/bgzf-filehandle/actions)
 
-Transparently read [indexed block-gzipped (BGZF)](http://www.htslib.org/doc/bgzip.html) files, such as those created by bgzip, using coordinates from the uncompressed file. The module is used in @gmod/indexedfasta to read bgzip-indexed fasta files (with gzi index, fai index, and fa). 
+Transparently read [indexed block-gzipped (BGZF)](http://www.htslib.org/doc/bgzip.html) files, such as those created by bgzip, using coordinates from the uncompressed file. The module is used in @gmod/indexedfasta to read bgzip-indexed fasta files (with gzi index, fai index, and fa).
 
 Users can also use the `unzip` function to unzip bgzip files whole (which pako has trouble with natively)
 

diff --git a/package.json b/package.json
@@ -45,14 +45,14 @@
     "@types/long": "^4.0.1",
     "@types/node": "^18.11.16",
     "@types/pako": "^2.0.0",
-    "@typescript-eslint/eslint-plugin": "^5.59.9",
-    "@typescript-eslint/parser": "^5.59.9",
+    "@typescript-eslint/eslint-plugin": "^8.16.0",
+    "@typescript-eslint/parser": "^8.16.0",
     "@vitest/coverage-v8": "^2.0.5",
     "eslint": "^9.9.0",
     "eslint-plugin-import": "^2.27.5",
     "eslint-plugin-unicorn": "^56.0.1",
-    "prettier": "^2.8.8",
-    "rimraf": "^5.0.1",
+    "prettier": "^3.4.1",
+    "rimraf": "^6.0.1",
     "typescript": "^5.1.3",
     "typescript-eslint": "^8.1.0",
     "vitest": "^2.1.6"

diff --git a/src/bgzFilehandle.ts b/src/bgzFilehandle.ts
@@ -108,7 +108,6 @@ export default class BgzFilehandle {
       blockNum < blockPositions.length - 1;
       blockNum += 1
     ) {
-
       const uncompressedBuffer = await this._readAndUncompressBlock(
         blockBuffer,
         blockPositions[blockNum],

diff --git a/src/index.ts b/src/index.ts
@@ -1,7 +1,2 @@
-
-
-
-
-
-export {default as BgzfFilehandle} from './bgzFilehandle'
-export {unzip, unzipChunk, unzipChunkSlice} from './unzip'
+export { default as BgzfFilehandle } from './bgzFilehandle'
+export { unzip, unzipChunk, unzipChunkSlice } from './unzip'
diff --git a/src/unzip.ts b/src/unzip.ts
@@ -16,4 +16,3 @@ function nodeUnzip(input: Buffer): Promise<Buffer> {
 export { nodeUnzip as unzip, nodeUnzip }
 
 export { pakoUnzip, unzipChunk, unzipChunkSlice } from './unzip-pako'
-
diff --git a/test/unzip.test.ts b/test/unzip.test.ts
@@ -6,7 +6,7 @@ describe('unzip', () => {
   it('can unzip bgzip-1.txt.gz', async () => {
     const testData = fs.readFileSync(require.resolve('./data/bgzip-1.txt.gz'))
     const fromPako = await pakoUnzip(testData)
-    const fromNode = (await nodeUnzip(testData))
+    const fromNode = await nodeUnzip(testData)
     expect(fromNode).toEqual(fromPako)
     expect(fromNode.length).toEqual(65569)
     expect(fromPako.length).toEqual(65569)

diff --git a/tsconfig.json b/tsconfig.json
@@ -1,8 +1,8 @@
 {
   "include": ["src"],
   "compilerOptions": {
+    "target": "es2015",
     "types": ["node"],
-    "lib": ["dom", "esnext"],
     "outDir": "esm",
     "declaration": true,
     "moduleResolution": "node",

diff --git a/yarn.lock b/yarn.lock
Original file line number	Diff line number	Diff line change
Expand Up		@@ -16,4 +16,3 @@ function nodeUnzip(input: Buffer): Promise<Buffer> {
		export { nodeUnzip as unzip, nodeUnzip }

		export { pakoUnzip, unzipChunk, unzipChunkSlice } from './unzip-pako'