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'uncoordinated' patternised #91

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Jan 11, 2021
Merged

'uncoordinated' patternised #91

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9988c2b
uncoordinated added to abnormal behaviors using NBO term
Clare72 Jan 11, 2021
d0fda81
imports and patterns updated
Clare72 Jan 11, 2021
26d3348
removed logical def and minor def edit for uncoordinated
Clare72 Jan 11, 2021
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3 changes: 1 addition & 2 deletions src/ontology/dpo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -1282,11 +1282,10 @@ SubClassOf(obo:FBcv_0000415 obo:FBcv_0001347)

# Class: obo:FBcv_0000416 (uncoordinated)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:DOS"^^xsd:string) obo:IAO_0000115 obo:FBcv_0000416 "Phenotype that is a lack of normal co-ordination in locomotor activity."^^xsd:string)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FBC:CP"^^xsd:string) Annotation(oboInOwl:hasDbXref "FBC:DOS"^^xsd:string) obo:IAO_0000115 obo:FBcv_0000416 "Phenotype that is abnormal co-ordination of motor activity."^^xsd:string)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:FBcv_0000416 "phenotypic_class"^^xsd:string)
AnnotationAssertion(oboInOwl:id obo:FBcv_0000416 "FBcv:0000416"^^xsd:string)
AnnotationAssertion(rdfs:label obo:FBcv_0000416 "uncoordinated"^^xsd:string)
EquivalentClasses(obo:FBcv_0000416 ObjectSomeValuesFrom(obo:BFO_0000051 ObjectIntersectionOf(obo:FBcv_0000416 ObjectSomeValuesFrom(obo:RO_0000052 obo:OBI_0100026))))
SubClassOf(obo:FBcv_0000416 obo:FBcv_0000414)

# Class: obo:FBcv_0000417 (abnormal flight)
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4 changes: 2 additions & 2 deletions src/ontology/imports/bfo_import.owl
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Expand Up @@ -9,8 +9,8 @@
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:terms="http://purl.org/dc/terms/">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/imports/bfo_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2020-12-16/imports/bfo_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-12-16</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2021-01-11/imports/bfo_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-01-11</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/caro_import.owl
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Expand Up @@ -12,8 +12,8 @@
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
xmlns:oboInOwl1="ttp://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/imports/caro_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2020-12-16/imports/caro_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-12-16</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2021-01-11/imports/caro_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-01-11</owl:versionInfo>
</owl:Ontology>


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4 changes: 2 additions & 2 deletions src/ontology/imports/chebi_import.owl
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Expand Up @@ -10,8 +10,8 @@
xmlns:chebi="http://purl.obolibrary.org/obo/chebi#3"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/imports/chebi_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2020-12-16/imports/chebi_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-12-16</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2021-01-11/imports/chebi_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-01-11</owl:versionInfo>
</owl:Ontology>


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4 changes: 4 additions & 0 deletions src/ontology/imports/chebi_terms_combined.txt
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Expand Up @@ -174,6 +174,7 @@ http://purl.obolibrary.org/obo/FBcv_0000414
http://purl.obolibrary.org/obo/FBcv_0000414
http://purl.obolibrary.org/obo/FBcv_0000415
http://purl.obolibrary.org/obo/FBcv_0000415
http://purl.obolibrary.org/obo/FBcv_0000416
http://purl.obolibrary.org/obo/FBcv_0000416
http://purl.obolibrary.org/obo/FBcv_0000417
http://purl.obolibrary.org/obo/FBcv_0000417
Expand Down Expand Up @@ -558,7 +559,9 @@ http://purl.obolibrary.org/obo/IAO_0000589
http://purl.obolibrary.org/obo/IAO_0000700
http://purl.obolibrary.org/obo/IAO_0100001
http://purl.obolibrary.org/obo/NBO_0000016
http://purl.obolibrary.org/obo/NBO_0000016
http://purl.obolibrary.org/obo/NBO_0000313
http://purl.obolibrary.org/obo/NBO_0000339
http://purl.obolibrary.org/obo/OBI_0100026
http://purl.obolibrary.org/obo/PATO_0000001
http://purl.obolibrary.org/obo/PATO_0000001
Expand Down Expand Up @@ -631,6 +634,7 @@ http://purl.obolibrary.org/obo/PATO_0001762
http://purl.obolibrary.org/obo/PATO_0001763
http://purl.obolibrary.org/obo/PATO_0001763
http://purl.obolibrary.org/obo/PATO_0001767
http://purl.obolibrary.org/obo/PATO_0001767
http://purl.obolibrary.org/obo/PATO_0001769
http://purl.obolibrary.org/obo/PATO_0001862
http://purl.obolibrary.org/obo/PATO_0001862
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14 changes: 7 additions & 7 deletions src/ontology/imports/cl_import.owl
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Expand Up @@ -14,8 +14,8 @@
xmlns:ubprop="http://purl.obolibrary.org/obo/ubprop#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/dpo/imports/cl_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2020-12-16/imports/cl_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2020-12-16</owl:versionInfo>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/dpo/releases/2021-01-11/imports/cl_import.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-01-11</owl:versionInfo>
</owl:Ontology>


Expand Down Expand Up @@ -2403,7 +2403,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/GO_0005634"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>horsetail nucleus</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:al</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:al</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mah</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:vw</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>PMID:15030757</oboInOwl:hasDbXref>
Expand Down Expand Up @@ -2528,7 +2528,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:go_curators</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -3276,7 +3276,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:isa_complete</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
</owl:Axiom>


Expand Down Expand Up @@ -7005,7 +7005,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A process that is part of the meiotic cell cycle.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:TermGenie</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GO_REF:0000060</oboInOwl:hasDbXref>
</owl:Axiom>

Expand Down Expand Up @@ -7042,7 +7042,7 @@ For example, A and B may be gene products and binding of B by A positively regul
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>A process that is part of the mitotic cell cycle.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:TermGenie</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GOC:mtg_cell_cycle</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>GO_REF:0000060</oboInOwl:hasDbXref>
</owl:Axiom>

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