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Ensembl Project

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  1. ensembl-vep ensembl-vep Public

    The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

    Perl 463 154

  2. WiggleTools WiggleTools Public

    Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency

    C 146 25

  3. VEP_plugins VEP_plugins Public

    Plugins for the Ensembl Variant Effect Predictor (VEP)

    Perl 143 118

  4. ensembl-rest ensembl-rest Public

    Language agnostic RESTful data access to Ensembl data over HTTP

    Perl 141 63

  5. ensembl ensembl Public

    The Ensembl Core Perl API and SQL schema

    Perl 80 76

  6. ensembl-pipeline ensembl-pipeline Public

    *DEPRECATED* Job management for the Ensembl Genebuild pipeline

    Perl 60 29

Repositories

Showing 10 of 210 repositories
  • plant-scripts Public

    Scripting analyses of genomes in Ensembl Plants

    Ensembl/plant-scripts’s past year of commit activity
    Perl 38 Apache-2.0 9 1 0 Updated Jan 15, 2025
  • ensembl-metadata-api Public

    ensembl_genome_metadata schema SQLAlchemy ORM layer

    Ensembl/ensembl-metadata-api’s past year of commit activity
    Python 1 Apache-2.0 2 0 3 Updated Jan 15, 2025
  • public-plugins Public

    Plugins for an Ensembl website

    Ensembl/public-plugins’s past year of commit activity
    JavaScript 9 Apache-2.0 46 0 5 Updated Jan 15, 2025
  • ensembl-compara Public

    The Ensembl Compara Perl API and SQL schema

    Ensembl/ensembl-compara’s past year of commit activity
    Perl 51 Apache-2.0 69 0 4 Updated Jan 15, 2025
  • ensembl-genomio Public

    Pipelines to turn basic genomic data into Ensembl cores and back

    Ensembl/ensembl-genomio’s past year of commit activity
    Python 9 Apache-2.0 7 0 2 Updated Jan 15, 2025
  • ensembl-production-imported Public

    Production pipelines used by data-teams to process imported genomes (former EnsemblGenomes pipelines)

    Ensembl/ensembl-production-imported’s past year of commit activity
    Perl 1 Apache-2.0 4 0 0 Updated Jan 14, 2025
  • ensembl-client Public

    Ensembl beta client

    Ensembl/ensembl-client’s past year of commit activity
    TypeScript 13 Apache-2.0 4 0 1 Updated Jan 14, 2025
  • tark Public
    Ensembl/tark’s past year of commit activity
    HTML 4 Apache-2.0 3 4 2 Updated Jan 14, 2025
  • ensembl-production Public

    Ensembl Production code

    Ensembl/ensembl-production’s past year of commit activity
    Perl 11 Apache-2.0 42 0 9 Updated Jan 14, 2025
  • ensembl-production-metazoa Public

    Metazoan production helper library and script to import ad-hoc annotations.

    Ensembl/ensembl-production-metazoa’s past year of commit activity
    Shell 1 Apache-2.0 1 0 0 Updated Jan 14, 2025