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@leepc12 leepc12 released this 12 Oct 04:31
· 477 commits to master since this release
v1.3.1
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Learn about vigilant mode.

IMPORTANT: Conda users must re-install Conda environment.

$ bash scripts/uninstall_conda_env.sh
$ bash scripts/install_conda_env.sh

Added latest python3 MACS2 2.2.4 to Conda env

  • removed py2 one from py2 Conda env
  • this upgrade slightly changes output of MACS2. so next version will be 1.4.0.

Added missing deps to Conda env

  • ghostscript: to fix gs error on Stanford Sherlock cluster
  • caper and croo: for user's convenience when pipeline's Conda env (py3) is activated. We have PYTHONNOUSERSITE env var set up in pipeline's Conda env so user's locally pip-installed caper, croo are ignored when it's activated.

Fix for issue #91

  • removed all file-linking (soft/hard) from the pipeline
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