Code

v2.1.4#264

Code

Merged

leepc12 merged 16 commits intomasterENCODE-DCC/chip-seq-pipeline2:masterfrom devENCODE-DCC/chip-seq-pipeline2:devCopy head branch name to clipboardFeb 15, 2022

+219-215

Commits

Commits on Dec 17, 2021

• update docs, default genome TSVs (v3->v4) in example input JSONs

  leepc12

  committed
  fa34185

  Copy full SHA for fa34185

• add cromwell.out.* to gitignore

  leepc12

  committed
  cec5091

  Copy full SHA for cec5091

Commits on Jan 6, 2022

• use gs uris for task test

  leepc12

  committed
  140fe29

  Copy full SHA for 140fe29

• no additional downloading of test data (directly use gs uris)

  leepc12

  committed
  0703549

  Copy full SHA for 0703549

• bump ver

  leepc12

  committed
  eb36828

  Copy full SHA for eb36828

• google auth for task test

  leepc12

  committed
  fb6df6f

  Copy full SHA for fb6df6f

• disable wf tests

  leepc12

  committed
  4e3cbd5

  Copy full SHA for 4e3cbd5

• use more recent cache

  leepc12

  committed
  19c96b0

  Copy full SHA for 19c96b0

• re-enable wf tests

  leepc12

  committed
  99fda52

  Copy full SHA for 99fda52

• Merge pull request #255 from ENCODE-DCC/WRAN-1863_update_default_genome_tsv_to_v4

  Show description for 654f91e
  leepc12

  authored
  654f91e

  Copy full SHA for 654f91e

Commits on Feb 10, 2022

• conda: install readline 6 seperately

  leepc12

  committed
  8803db6

  Copy full SHA for 8803db6

• bump ver

  leepc12

  committed
  6a2635b

  Copy full SHA for 6a2635b

• ci: upgrade ubuntu 16->20

  leepc12

  committed
  4fba4ff

  Copy full SHA for 4fba4ff

• Merge pull request #262 from ENCODE-DCC/PIP-1667_fix_conda_conflicts

  Show description for fbf7b20
  leepc12

  authored
  fbf7b20

  Copy full SHA for fbf7b20

Commits on Feb 15, 2022

• more info in qc_report

  leepc12

  committed
  9594bee

  Copy full SHA for 9594bee

• Merge pull request #263 from ENCODE-DCC/PIPE-36_add_more_info_to_report

  Show description for 3b918b6
  leepc12

  authored
  3b918b6

  Copy full SHA for 3b918b6