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List paths in generated diags py file #674

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List paths in generated diags py file #674

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33 changes: 21 additions & 12 deletions zppy/templates/e3sm_diags.bash
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Original file line number Diff line number Diff line change
Expand Up @@ -74,13 +74,13 @@ climo_dir_primary_land=climo_land
climo_dir_primary_land=climo_test_land
{%- endif %}
# Create local links to input climo files
climo_dir_source={{ output }}/post/lnd/{{ grid }}/clim/{{ '%dyr' % (year2-year1+1) }}
create_links_climo ${climo_dir_source} ${climo_dir_primary_land} ${case} ${Y1} ${Y2} 1
climo_dir_source_lnd_obs={{ output }}/post/lnd/{{ grid }}/clim/{{ '%dyr' % (year2-year1+1) }}
create_links_climo ${climo_dir_source_lnd_obs} ${climo_dir_primary_land} ${case} ${Y1} ${Y2} 1
{% if run_type == "model_vs_model" %}
# Create local links to input climo files (ref model)
climo_dir_source={{ reference_data_path }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_dir_source_lnd_ref={{ reference_data_path }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_dir_ref_land=climo_ref_land
create_links_climo ${climo_dir_source} ${climo_dir_ref_land} {{ ref_name }} ${ref_Y1} ${ref_Y2} 2
create_links_climo ${climo_dir_source_lnd_ref} ${climo_dir_ref_land} {{ ref_name }} ${ref_Y1} ${ref_Y2} 2
{%- endif %}
{%- endif %}

Expand All @@ -91,13 +91,13 @@ climo_dir_primary=climo
climo_dir_primary=climo_test
{%- endif %}
# Create local links to input climo files
climo_dir_source={{ output }}/post/atm/{{ grid }}/clim/{{ '%dyr' % (year2-year1+1) }}
create_links_climo ${climo_dir_source} ${climo_dir_primary} ${case} ${Y1} ${Y2} 1
climo_dir_source_atm_obs={{ output }}/post/atm/{{ grid }}/clim/{{ '%dyr' % (year2-year1+1) }}
create_links_climo ${climo_dir_source_atm_obs} ${climo_dir_primary} ${case} ${Y1} ${Y2} 1
{% if run_type == "model_vs_model" %}
# Create local links to input climo files (ref model)
climo_dir_source={{ reference_data_path }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_dir_source_atm_ref={{ reference_data_path }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_dir_ref=climo_ref
create_links_climo ${climo_dir_source} ${climo_dir_ref} {{ ref_name }} ${ref_Y1} ${ref_Y2} 2
create_links_climo ${climo_dir_source_atm_ref} ${climo_dir_ref} {{ ref_name }} ${ref_Y1} ${ref_Y2} 2
{%- endif %}
{%- endif %}

Expand All @@ -109,13 +109,13 @@ climo_diurnal_dir_primary=climo_{{ climo_diurnal_frequency }}
climo_diurnal_dir_primary=climo_{{ climo_diurnal_frequency }}_test
{%- endif %}
# Create local links to input diurnal cycle climo files
climo_diurnal_dir_source={{ output }}/post/atm/{{ grid }}/clim_{{ climo_diurnal_frequency }}/{{ '%dyr' % (year2-year1+1) }}
create_links_climo_diurnal ${climo_diurnal_dir_source} ${climo_diurnal_dir_primary} ${case} ${Y1} ${Y2} 3
climo_diurnal_dir_source_obs={{ output }}/post/atm/{{ grid }}/clim_{{ climo_diurnal_frequency }}/{{ '%dyr' % (year2-year1+1) }}
create_links_climo_diurnal ${climo_diurnal_dir_source_obs} ${climo_diurnal_dir_primary} ${case} ${Y1} ${Y2} 3
{% if run_type == "model_vs_model" %}
# Create local links to input climo files (ref model)
climo_diurnal_dir_source={{ reference_data_path_climo_diurnal }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_diurnal_dir_source_ref={{ reference_data_path_climo_diurnal }}/{{ '%dyr' % (ref_year2-ref_year1+1) }}
climo_diurnal_dir_ref=climo_diurnal_ref
create_links_climo_diurnal ${climo_diurnal_dir_source} ${climo_diurnal_dir_ref} {{ ref_name }} ${ref_Y1} ${ref_Y2} 4
create_links_climo_diurnal ${climo_diurnal_dir_source_ref} ${climo_diurnal_dir_ref} {{ ref_name }} ${ref_Y1} ${ref_Y2} 4
{%- endif %}
{%- endif %}

Expand Down Expand Up @@ -155,6 +155,15 @@ echo

# Prepare configuration file
cat > e3sm.py << EOF
# Path information:
# For climo, data is copied from these directories to a local directory
# climo_dir_source_lnd_obs = ${climo_dir_source_lnd_obs}
# climo_dir_source_lnd_ref = ${climo_dir_source_lnd_ref}
# climo_dir_source_atm_obs = ${climo_dir_source_atm_obs}
# climo_dir_source_atm_ref = ${climo_dir_source_atm_ref}
# climo_diurnal_dir_source_obs = ${climo_diurnal_dir_source_obs}
# climo_diurnal_dir_source_ref = ${climo_diurnal_dir_source_ref}
# For ts, data is used directly from original directories
Comment on lines +158 to +166
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I think in bash an undefined variable will just show up as an empty string, so this shouldn't cause problems

import os
import numpy
{%- if "area_mean_time_series" in sets %}
Expand Down
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