adding more zenodo tests and update default FBP parameters #108
Workflow file for this run
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name: httomolibgpu tests | |
on: | |
pull_request: | |
branches: | |
- main | |
jobs: | |
iris-gpu: | |
runs-on: iris-gpu | |
container: | |
image: nvidia/cuda:12.6.3-devel-ubi8 | |
env: | |
NVIDIA_VISIBLE_DEVICES: ${{ env.NVIDIA_VISIBLE_DEVICES }} | |
options: --gpus all --runtime=nvidia | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Checkout repository code | |
uses: actions/checkout@v4 | |
- name: Create conda environment | |
uses: mamba-org/setup-micromamba@v1 | |
with: | |
environment-file: conda/environment.yml | |
environment-name: httomo | |
post-cleanup: 'all' | |
init-shell: bash | |
- name: Install httomolibgpu | |
run: | | |
pip install .[dev] | |
micromamba list | |
- name: Run unit tests on small data | |
run: | | |
pytest tests/ | |
# Optional: Run Zenodo tests only if PR has a label | |
- name: Download and run Zenodo tests | |
if: contains(github.event.pull_request.labels.*.name, 'run-zenodo-tests') | |
run: | | |
chmod +x ./.scripts/download_zenodo.py | |
./.scripts/download_zenodo.py zenodo-tests/large_data_archive | |
pytest zenodo-tests/ |