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[AN-372] Make DRS URI IGV enhancements generally available #5225

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merged 5 commits into from
Jan 25, 2025

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@eweitz eweitz commented Jan 21, 2025

Jira Ticket: https://broadworkbench.atlassian.net/browse/AN-372

Summary of changes

This makes the enhancements for the Terra Roadmap item "IGV is easier to use with hosted data (support for DRS)" generally available, by removing this particular feature preview configuration.

Assuming this gets adequate approvals from PR reviewers, I will plan to merge this on Friday, 1/24 so it gets deployed to general availability on Monday, 1/27.

Here's how it looks:

IGV_DRS_URI_support_generally_available__Terra_2025-01-21.mov

Testing strategy

  1. Go to http://localhost:3000/#feature-preview
  2. Confirm "Enhancements to IGV genome browser integration" feature preview does not appear
  3. Go to http://localhost:3000/#workspaces/anvil-dev-developer-work/igv_drs_test_area/data
  4. Click "Data", click "table_with_numeric_fields" table
  5. In first row, scroll right to the "tbi_file_ref" column
  6. Confirm a DRS URI is shown, i.e. value starts with "drs://jade.datarepo-dev.broad..."
  7. Click checkbox to select first row
  8. Click "Open With...", then "IGV"
  9. Confirm you see "Searching for valid files with indices..."
  10. Wait a few moments while the DRS URI resolves
  11. Confirm IGV loads, i.e. confirm you see "Zoom in to see features" in IGV
  12. Search "LDLR" in "Locus Search"
  13. Confirm variants are shown in IGV

@eweitz eweitz added this pull request to the merge queue Jan 25, 2025
Merged via the queue into dev with commit 8fcc172 Jan 25, 2025
11 checks passed
@eweitz eweitz deleted the ew-release-igv-drs branch January 25, 2025 01:24
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4 participants