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dummy changes
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Daniel-VM committed Sep 2, 2024
1 parent 32a4245 commit 0eac72c
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Showing 2 changed files with 2 additions and 2 deletions.
2 changes: 1 addition & 1 deletion bu_isciii/templates/mag/ANALYSIS/lablog_mag_all
Original file line number Diff line number Diff line change
Expand Up @@ -2,4 +2,4 @@ mkdir 00-reads
cd 00-reads; cat ../samples_id.txt | xargs -I % echo "ln -s ../../RAW/%_*R1*.fastq.gz %_R1.fastq.gz" | bash; cd -
cd 00-reads; cat ../samples_id.txt | xargs -I % echo "ln -s ../../RAW/%_*R2*.fastq.gz %_R2.fastq.gz" | bash; cd -

mv ANALYSIS01_MAG_ALL $(date '+%Y%m%d')_ANALYSIS01_MAG_ALL
mv ANALYSIS01_MAG_ALL $(date '+%Y%m%d')_ANALYSIS01_MAG_ALL
2 changes: 1 addition & 1 deletion bu_isciii/templates/mag/DOC/mag.config
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ process {

withName:'SPADES|MEGAHIT' {
errorStrategy = { task.exitStatus in [143,137,21,12,1] ? 'retry' : 'finish' }
maxRetries = 2
maxRetries = 2
cpus = { 10 * task.attempt }
memory = { 64.GB * task.attempt }
time = { 24.h }
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