🎁 JustRAIGS Challenge Pack 🎁

This Challenge Pack is a collection of JustRAIGS challenge codes and settings for IEEE ISBI 2024.

If you have any questions, feel free to reach out to me at [email protected].

⚙️ Example algorithm ⚙️

An example algorithm container is provided via: ./example-algorithm.

You can study it and run it by calling:

$ cd ./example-algorithm
$ docker build --tag example-algorithm . && \
    rm -f test/output/* && \
    docker run --rm --gpus all \
    --volume $(pwd)/test/input:/input \
    --volume $(pwd)/test/output:/output \
    example-algorithm

This should output something along the lines of:

=+==+==+==+==+==+==+==+==+==+=
Torch CUDA is available: True
        number of devices: 1
        current device: 0
        properties: _CudaDeviceProperties(name='NVIDIA GeForce GTX 1650 Ti', major=7, minor=5, total_memory=4095MB, multi_processor_count=16)
=+==+==+==+==+==+==+==+==+==+=
Input Files:
[PosixPath('/input/2332ec76-d9ba-437f-b03b-1fbebaf99401.mha')]
De-Stacked /tmp/tmp0drsxkpw/image_1.png
De-Stacked /tmp/tmp0drsxkpw/image_2.png
De-Stacked /tmp/tmp0drsxkpw/image_3.png

You can prep it for upload using:

$  docker save example-algorithm | gzip -c > example-algorithm.tar.gz