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python dcan_signal_processing #32

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python dcan_signal_processing #32

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56f831f
Update README.md
cindyhfls Oct 2, 2024
5d01910
update some explorations to get the code in python and python only
cindyhfls Oct 2, 2024
f517af2
reorganize files
cindyhfls Oct 2, 2024
c3beba1
Delete Tu_python_attempt/dcan_signal_processing_developing_backup.ipynb
cindyhfls Oct 2, 2024
243bd59
run jupyter notebook to get output
cindyhfls Oct 3, 2024
34078dc
make all-inclusive python script DCANBOLD_reprocess.py
cindyhfls Dec 1, 2024
f4175fc
Update README.md
cindyhfls Dec 1, 2024
b299493
remove the description about Connectome Workbench, we didn't use it
cindyhfls Dec 1, 2024
4cb9eb3
Update README.md
cindyhfls Dec 1, 2024
d4a70e1
fixed FD calculation not using brain radius
cindyhfls Dec 2, 2024
8117124
add changes to make fd_th <=0 input meaning no high-motion frame remo…
cindyhfls Feb 6, 2025
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6 changes: 6 additions & 0 deletions .gitignore
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Expand Up @@ -6,3 +6,9 @@ templates/parcellations/
*.nii
*.mat
._*
./*/*backup*
./*/test*
__pycache__/*
Tu_python_attempt/old/*
Tu_python_attempt/__pycache__/*
example_config_json/*
4 changes: 3 additions & 1 deletion README.md
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@@ -1,4 +1,6 @@
# dcan signal processing
# dcan signal processing

2024.12.01 - add DCANBOLD_reprocess.py to redo the confound removal part ([task] mode below) for minor differences (e.g. no GSR/different movement parameter file/etc) with an all-inclusive Python script that does not need anything else (MATLAB or toolboxes or Connectome Workbench) except for some basic python packages (numpy,scipy,matplotloib,nibabel) installed.

\*\*
This is a repository for the dcan labs bold signal processing. It is
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