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pkgdown website url + actions error due to o2groups not found
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CyGei committed Jan 25, 2025
1 parent 2a65843 commit 7771435
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4 changes: 4 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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Expand Up @@ -40,6 +40,10 @@ jobs:
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- name: Install o2groups from GitHub
run: |
R -e "remotes::install_github('CyGei/o2groups')"
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
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49 changes: 49 additions & 0 deletions .github/workflows/pkgdown.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:
release:
types: [published]
workflow_dispatch:

name: pkgdown.yaml

permissions: read-all

jobs:
pkgdown:
runs-on: ubuntu-latest
# Only restrict concurrency for non-PR jobs
concurrency:
group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
permissions:
contents: write
steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::pkgdown, local::.
needs: website

- name: Build site
run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
shell: Rscript {0}

- name: Deploy to GitHub pages 🚀
if: github.event_name != 'pull_request'
uses: JamesIves/[email protected]
with:
clean: false
branch: gh-pages
folder: docs
2 changes: 1 addition & 1 deletion DESCRIPTION
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@@ -1,7 +1,7 @@
Package: linktree
Title: Estimates Transmission Assortativity Coefficients From Transmission Trees
Version: 0.0.0.9000
URL: https://doi.org/10.1000/journalname.paperdoi
URL: https://doi.org/10.1000/journalname.paperdoi, https://cygei.github.io/linktree/
Authors@R:
c(person("Cyril", "Geismar", , "[email protected]", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-8486-5890")),
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2 changes: 1 addition & 1 deletion _pkgdown.yml
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@@ -1,4 +1,4 @@
url: ~
url: https://cygei.github.io/linktree/
template:
bootstrap: 5

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