Run pytest when building conda pkg and move setup.py deps to conda (#3)

conda/meta.yaml

@@ -1,36 +1,49 @@
 # Conda recipe
 {% set data = load_setup_py_data() %}
+
 package:
   name: coexpnetviz
   version: '{{ data['version'] }}'
+
 source:
   path: ..
+
 build:
   script: '{{ PYTHON }} -m pip install . -vv'
   entry_points:
     - coexpnetviz = coexpnetviz.main:main
+
 requirements:
   build:
+    - pip
     - python
-    - setuptools
   host:
     # Conda recommends always adding the interpreter as a host dep
     - python
   run:
-    - python
-    - attrs>=17
-    - matplotlib>=1
-    - numpy>=1
-    - pandas>=0.19
-    - more-itertools>=3
-    - varbio==3.*
+    - python >=3.6  # a reasonable minimum
+    - attrs >=17
+    - matplotlib >=1
+    - numpy >=1
+    - pandas >=0.19
+    - more-itertools >=3
+    - varbio ==3.*
+
 test:
-  # A very simple test, ensure we can run coexpnetviz without error
+  source_files:
+    - pytest.ini
+    - tests
+  requires:
+    - pytest >=3
+    - pytil ==8.*
   commands:
+    # Ensure we can run coexpnetviz without error
     - coexpnetviz --help
+    # Ensure tests succeed
+    - pytest
+
 about:
-  # TODO point home to cytoscape app page instead
-  home: https://gitlab.psb.ugent.be/deep_genome/coexpnetviz.git
+  home: https://github.com/CoExpNetViz/coexpnetviz-python
   license: LGPL3
   license_file: LICENSE.txt
   summary: Internal python CLI used by CoExpNetViz Cytoscape app

setup.py

@@ -1,39 +1,13 @@
 from setuptools import setup, find_packages
-from collections import defaultdict
-from pathlib import Path
-import os
 
-setup_args = dict(
-    version='5.0.0.dev1',
-    name='coexpnetviz',
-    long_description=Path('README.rst').read_text(),
-    packages=find_packages(),
-    extras_require={
-        'dev': [
-            'pytest>=3',
-            'pytil[data_frame,test]==8.*',
-        ],
-    },
+name = 'coexpnetviz'
+setup(
+    version='5.0.0.dev',
+    name=name,
     entry_points={'console_scripts': [
         'coexpnetviz = coexpnetviz.main:main'
     ]},
-)
-
-# Generate package data
-#
-# Anything placed underneath a directory named 'data' in a package, is added to
-# the package_data of that package; i.e. included in the sdist/bdist and
-# accessible via pkg_resources.resource_*
-project_root = Path(__file__).parent
-package_data = defaultdict(list)
-for package in setup_args['packages']:
-    package_dir = project_root / package.replace('.', '/')
-    data_dir = package_dir / 'data'
-    if data_dir.exists() and not (data_dir / '__init__.py').exists():
-        # Found a data dir
-        for parent, _, files in os.walk(str(data_dir)):
-            package_data[package].extend(str((data_dir / parent / file).relative_to(package_dir)) for file in files)
-setup_args['package_data'] = {k: sorted(v) for k,v in package_data.items()}  # sort to avoid unnecessary git diffs
 
-# setup
-setup(**setup_args)
+    # Only include {name}/, not e.g. tests/
+    packages=find_packages(include=(name, name + '.*')),
+)