Merge pull request #16 from Clinical-Genomics/fix_updated_jax_ontolog…

…y_interface

Fix #15 - JAX ontology interface change

CHANGELOG.md

@@ -1,5 +1,8 @@
 ## Changelog
 
+### [1.2.2]
+#### Fixed
+- Adding manual HPO terms was broken - updated JAX Ontology API Term Interface to fix
 
 ### [1.2.1]
 #### Fixed

package.json

@@ -1,7 +1,7 @@
 {
   "name": "react-ts",
   "private": true,
-  "version": "1.2.1",
+  "version": "1.2.2",
   "type": "module",
   "scripts": {
     "dev": "vite",

src/hpoJax.ts

@@ -1,29 +1,9 @@
 export interface TermResponse {
-  details: Details;
-  relations: Relations;
-}
-
-export interface Relations {
-  termCount: number;
-  parents: Parent[];
-  children: Parent[];
-}
-
-export interface Parent {
-  name: string;
-  id: number;
-  childrenCount: number;
-  ontologyId: string;
-}
-
-export interface Details {
   name: string;
   id: string;
-  altTermIds: string[];
   definition: string;
   comment: string;
   synonyms: string[];
-  isObsolete: boolean;
-  xrefs: string[];
-  pubmedXrefs: string[];
+  xrefs?: string[];
+  descendantCount?: number;
 }

src/utils/lookupHpoTerm.ts

@@ -11,7 +11,7 @@ async function lookupHpoTerm(term: string): Promise<IResult> {
   );
   if (ret.ok) {
     const res = (await ret.json()) as TermResponse;
-    return { term, label: res.details.name };
+    return { term, label: res.name };
   } else {
     return { error: 'Unknown HPO term' };
   }
@@ -20,9 +20,9 @@ async function lookupHpoTerm(term: string): Promise<IResult> {
 export interface IJaxTerm {
   name: string;
   id: string;
-  childrenCount: number;
-  ontologyId: string;
-  synonym?: string;
+  descendantCount: number;
+  xrefs?: string[];
+  synonyms: string[];
 }
 export interface TermsResponse {
   error?: string;