Add SMRT Link API client and EPP for fetching run information

[Karl-Svard]

Added

• Added a client for working with the SMRT Link API
• Added new EPP for fetching run information from SMRT Link

Changed

• Refactored the location of modules used for setting up the API connection to StatusDB (cg)

Steps to consider while deploying

• Configuration changes:
• Documentation updates:
• Inform users by email:

Review:

• Code approved by
• Tests executed on stage by: (Document the test done with screen shots and description.)
• "Merge and deploy" approved by

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[Karl-Svard]

Tests performed on stage

New automation

Get SMRT Link Run Info

bash -c -l "conda activate cg_lims &&  lims -c /home/glsai/.genologics.yaml epps -l {compoundOutputFileLuid0} -p {processLuid} udf set fetch-smrtlink-run-information"

Performance

Runs with different setups

When you have an incorrect run name

[idalindegaard]

Great work Karl! It seems to work nicely, and well done fixing the issue with the pytest 👏💯