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github-action committed Mar 5, 2025
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73 changes: 73 additions & 0 deletions log-files/2025-03-05_11-58-32/Test1D3DLinearEllipticSolver_valgrind.txt
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==25152== Memcheck, a memory error detector
==25152== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25152== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25152== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/pde/test/Test1D3DLinearEllipticSolver -malloc_debug -malloc_dump -memory_info
==25152== Parent PID: 24097
==25152==
==25152==
==25152== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25152== Open file descriptor 12:
==25152== at 0x84F007D: pipe (pipe.c:29)
==25152== by 0x104DE07D: ???
==25152== by 0xC3754CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25152== by 0x8B55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25152== by 0x8AEED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25152== by 0x6AB5D38: PetscInitialize (pinit.c:924)
==25152== by 0x698C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25152== by 0x698C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25152== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25152== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25152== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25152== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25152== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25152== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25152==
==25152== Open file descriptor 8: /dev/shm/open_mpi.0000
==25152== at 0x84F4A1C: __open_nocancel (open64_nocancel.c:39)
==25152== by 0x8478BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25152== by 0x7D45822: ???
==25152== by 0x7D4596F: ???
==25152== by 0xC41A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25152== by 0xC41A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25152== by 0xC3D0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25152== by 0xC3752DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25152== by 0x8B55418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25152== by 0x8AEED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25152== by 0x6AB5D38: PetscInitialize (pinit.c:924)
==25152== by 0x698C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25152== by 0x698C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25152== by 0x165094: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25152== by 0x15FF33: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25152== by 0x162CEC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25152== by 0x162BE7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25152== by 0x1631FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25152== by 0x15E735: main (Test1D3DLinearEllipticSolver.cpp:18)
==25152==
==25152== Open file descriptor 158:
==25152== <inherited from parent>
==25152==
==25152== Open file descriptor 155:
==25152== <inherited from parent>
==25152==
==25152== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1D3DLinearEllipticSolver_valgrind.txt
==25152== <inherited from parent>
==25152==
==25152== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25152== <inherited from parent>
==25152==
==25152==
==25152== HEAP SUMMARY:
==25152== in use at exit: 618,254 bytes in 8,238 blocks
==25152== total heap usage: 51,120 allocs, 42,882 frees, 1,339,273,981 bytes allocated
==25152==
==25152== LEAK SUMMARY:
==25152== definitely lost: 0 bytes in 0 blocks
==25152== indirectly lost: 0 bytes in 0 blocks
==25152== possibly lost: 0 bytes in 0 blocks
==25152== still reachable: 24 bytes in 2 blocks
==25152== suppressed: 618,230 bytes in 8,236 blocks
==25152== Reachable blocks (those to which a pointer was found) are not shown.
==25152== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25152==
==25152== For lists of detected and suppressed errors, rerun with: -s
==25152== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)
73 changes: 73 additions & 0 deletions log-files/2025-03-05_11-58-32/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
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Original file line number Diff line number Diff line change
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==43907== Memcheck, a memory error detector
==43907== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==43907== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==43907== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/Test1dMonodomainShannonCvodeBenchmarks -malloc_debug -malloc_dump -memory_info
==43907== Parent PID: 24097
==43907==
==43907==
==43907== FILE DESCRIPTORS: 9 open (3 std) at exit.
==43907== Open file descriptor 12:
==43907== at 0xA7CF07D: pipe (pipe.c:29)
==43907== by 0x1433107D: ???
==43907== by 0xFB384CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43907== by 0xBEC8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43907== by 0xBE61D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43907== by 0xAB58D38: PetscInitialize (pinit.c:924)
==43907== by 0xA0B61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43907== by 0xA0B6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43907== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43907== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43907== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43907== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43907== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43907== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43907==
==43907== Open file descriptor 8: /dev/shm/open_mpi.0000
==43907== at 0xA7D3A1C: __open_nocancel (open64_nocancel.c:39)
==43907== by 0xA757BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==43907== by 0xA0F1822: ???
==43907== by 0xA0F196F: ???
==43907== by 0xFBDD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43907== by 0xFBDD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43907== by 0xFB93922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==43907== by 0xFB382DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==43907== by 0xBEC8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43907== by 0xBE61D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==43907== by 0xAB58D38: PetscInitialize (pinit.c:924)
==43907== by 0xA0B61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==43907== by 0xA0B6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==43907== by 0x1220FC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==43907== by 0x11D313: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==43907== by 0x11F5E6: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==43907== by 0x11F4E2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==43907== by 0x11FAF5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==43907== by 0x11BB15: main (Test1dMonodomainShannonCvodeBenchmarks.cpp:18)
==43907==
==43907== Open file descriptor 158:
==43907== <inherited from parent>
==43907==
==43907== Open file descriptor 155:
==43907== <inherited from parent>
==43907==
==43907== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test1dMonodomainShannonCvodeBenchmarks_valgrind.txt
==43907== <inherited from parent>
==43907==
==43907== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==43907== <inherited from parent>
==43907==
==43907==
==43907== HEAP SUMMARY:
==43907== in use at exit: 618,743 bytes in 8,244 blocks
==43907== total heap usage: 319,600 allocs, 311,356 frees, 1,398,112,778 bytes allocated
==43907==
==43907== LEAK SUMMARY:
==43907== definitely lost: 0 bytes in 0 blocks
==43907== indirectly lost: 0 bytes in 0 blocks
==43907== possibly lost: 0 bytes in 0 blocks
==43907== still reachable: 24 bytes in 2 blocks
==43907== suppressed: 618,719 bytes in 8,242 blocks
==43907== Reachable blocks (those to which a pointer was found) are not shown.
==43907== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==43907==
==43907== For lists of detected and suppressed errors, rerun with: -s
==43907== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 42 from 34)
73 changes: 73 additions & 0 deletions log-files/2025-03-05_11-58-32/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
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Original file line number Diff line number Diff line change
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==26403== Memcheck, a memory error detector
==26403== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==26403== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==26403== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/Test2dVertexBasedSimulationWithSrnModels -malloc_debug -malloc_dump -memory_info
==26403== Parent PID: 24097
==26403==
==26403==
==26403== FILE DESCRIPTORS: 9 open (3 std) at exit.
==26403== Open file descriptor 12:
==26403== at 0xF84907D: pipe (pipe.c:29)
==26403== by 0x196FC07D: ???
==26403== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26403== by 0x114E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26403== by 0x11482D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26403== by 0x10177D38: PetscInitialize (pinit.c:924)
==26403== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26403== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26403== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26403== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26403== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26403== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26403== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26403== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26403==
==26403== Open file descriptor 8: /dev/shm/open_mpi.0000
==26403== at 0xF84DA1C: __open_nocancel (open64_nocancel.c:39)
==26403== by 0xF7D1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==26403== by 0xF187822: ???
==26403== by 0xF18796F: ???
==26403== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26403== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26403== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==26403== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==26403== by 0x114E9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26403== by 0x11482D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==26403== by 0x10177D38: PetscInitialize (pinit.c:924)
==26403== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==26403== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==26403== by 0x1221C2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==26403== by 0x11D90D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==26403== by 0x11FCFC: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==26403== by 0x11FB9C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==26403== by 0x120233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==26403== by 0x11BD35: main (Test2dVertexBasedSimulationWithSrnModels.cpp:19)
==26403==
==26403== Open file descriptor 158:
==26403== <inherited from parent>
==26403==
==26403== Open file descriptor 155:
==26403== <inherited from parent>
==26403==
==26403== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/Test2dVertexBasedSimulationWithSrnModels_valgrind.txt
==26403== <inherited from parent>
==26403==
==26403== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==26403== <inherited from parent>
==26403==
==26403==
==26403== HEAP SUMMARY:
==26403== in use at exit: 618,350 bytes in 8,239 blocks
==26403== total heap usage: 1,124,508 allocs, 1,116,269 frees, 1,415,941,991 bytes allocated
==26403==
==26403== LEAK SUMMARY:
==26403== definitely lost: 0 bytes in 0 blocks
==26403== indirectly lost: 0 bytes in 0 blocks
==26403== possibly lost: 0 bytes in 0 blocks
==26403== still reachable: 56 bytes in 3 blocks
==26403== suppressed: 618,294 bytes in 8,236 blocks
==26403== Reachable blocks (those to which a pointer was found) are not shown.
==26403== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==26403==
==26403== For lists of detected and suppressed errors, rerun with: -s
==26403== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
73 changes: 73 additions & 0 deletions log-files/2025-03-05_11-58-32/TestAbstractAnalyticJacobian_valgrind.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1,73 @@
==25064== Memcheck, a memory error detector
==25064== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==25064== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==25064== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/ode/test/TestAbstractAnalyticJacobian -malloc_debug -malloc_dump -memory_info
==25064== Parent PID: 24097
==25064==
==25064==
==25064== FILE DESCRIPTORS: 9 open (3 std) at exit.
==25064== Open file descriptor 12:
==25064== at 0x4F1007D: pipe (pipe.c:29)
==25064== by 0xB1E607D: ???
==25064== by 0x8CDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25064== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25064== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25064== by 0x5308D38: PetscInitialize (pinit.c:924)
==25064== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25064== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25064== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25064== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25064== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25064== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25064== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25064== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25064==
==25064== Open file descriptor 8: /dev/shm/open_mpi.0000
==25064== at 0x4F14A1C: __open_nocancel (open64_nocancel.c:39)
==25064== by 0x4E98BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==25064== by 0x4B77822: ???
==25064== by 0x4B7796F: ???
==25064== by 0x8D836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25064== by 0x8D83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25064== by 0x8D39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==25064== by 0x8CDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==25064== by 0x6678418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25064== by 0x6611D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==25064== by 0x5308D38: PetscInitialize (pinit.c:924)
==25064== by 0x4B3C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==25064== by 0x4B3C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==25064== by 0x117D7C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==25064== by 0x11320F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==25064== by 0x11560C: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==25064== by 0x115507: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==25064== by 0x115B1B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==25064== by 0x111715: main (TestAbstractAnalyticJacobian.cpp:18)
==25064==
==25064== Open file descriptor 158:
==25064== <inherited from parent>
==25064==
==25064== Open file descriptor 155:
==25064== <inherited from parent>
==25064==
==25064== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAbstractAnalyticJacobian_valgrind.txt
==25064== <inherited from parent>
==25064==
==25064== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==25064== <inherited from parent>
==25064==
==25064==
==25064== HEAP SUMMARY:
==25064== in use at exit: 617,902 bytes in 8,238 blocks
==25064== total heap usage: 45,030 allocs, 36,792 frees, 1,338,184,361 bytes allocated
==25064==
==25064== LEAK SUMMARY:
==25064== definitely lost: 0 bytes in 0 blocks
==25064== indirectly lost: 0 bytes in 0 blocks
==25064== possibly lost: 0 bytes in 0 blocks
==25064== still reachable: 24 bytes in 2 blocks
==25064== suppressed: 617,878 bytes in 8,236 blocks
==25064== Reachable blocks (those to which a pointer was found) are not shown.
==25064== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==25064==
==25064== For lists of detected and suppressed errors, rerun with: -s
==25064== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)
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