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BUG and NEW: New Module and Bugs fixed
BayesianDTI, ClusteringScalar and LSDP Modules are done. NOTE: Small bug in LSDP still occur when running 1mm images (have to used WM mask to fix it). New Morphological Shape Constraints Module only to label adjustment in the final DTI Lesion Track Python command. MRF, GeodesicActiveContour and FCM classifiers were removed to further implementations.
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119
BayesianDTISegmentation/itkLogisticContrastEnhancementImageFilter.h
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| #ifndef __itkLogisticContrastEnhancementImageFilter_h | ||
| #define __itkLogisticContrastEnhancementImageFilter_h | ||
| #include "itkImageToImageFilter.h" | ||
| #include "itkImage.h" | ||
| #include "itkNumericTraits.h" | ||
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| namespace itk | ||
| { | ||
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| template< typename TInputImage , typename TOutputImage> | ||
| class ITK_EXPORT LogisticContrastEnhancementImageFilter: | ||
| public ImageToImageFilter< TInputImage, TOutputImage > | ||
| { | ||
| public: | ||
| /** Extract dimension from inputs images, where it is assumed there are with the same type. */ | ||
| itkStaticConstMacro(InputImageDimension, unsigned int, | ||
| TInputImage::ImageDimension); | ||
| itkStaticConstMacro(OutputImageDimension, unsigned int, | ||
| TOutputImage::ImageDimension); | ||
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| /** Convenient typedefs for simplifying declarations. */ | ||
| typedef TInputImage InputImageType; | ||
| typedef TOutputImage OutputImageType; | ||
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| /** Standard class typedefs. */ | ||
| typedef LogisticContrastEnhancementImageFilter Self; | ||
| typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass; | ||
| typedef SmartPointer< Self > Pointer; | ||
| typedef SmartPointer< const Self > ConstPointer; | ||
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| /** Method for creation through the object factory. */ | ||
| itkNewMacro(Self) | ||
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| /** Run-time type information (and related methods). */ | ||
| itkTypeMacro(LogisticContrastEnhancementImageFilter, ImageToImageFilter) | ||
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| typedef typename InputImageType::PixelType InputPixelType; | ||
| typedef typename OutputImageType::PixelType OutputPixelType; | ||
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| /** Set the maximum output. */ | ||
| itkSetMacro(MaximumOutput, double) | ||
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| /** Set the minimum output. */ | ||
| itkSetMacro(MinimumOutput, double) | ||
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| /** Set the Histogram bins. */ | ||
| itkSetMacro(NumberOfBins, unsigned int) | ||
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| /** Set the Tolerance. */ | ||
| itkSetMacro(Tolerance, char) | ||
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| /** Set the object area. */ | ||
| itkSetMacro(FlipObjectArea, bool) | ||
| itkBooleanMacro(FlipObjectArea) | ||
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| /** Set if use manual tolerance. */ | ||
| itkSetMacro(ManualTolerance, bool) | ||
| itkBooleanMacro(ManualTolerance) | ||
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| /** Set threshold method. */ | ||
| itkSetMacro(ThresholdMethod, unsigned char) | ||
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| itkGetMacro(FlipObjectArea, bool) | ||
| itkGetMacro(ManualTolerance, bool) | ||
| itkGetMacro(Alpha, double) | ||
| itkGetMacro(Beta, double) | ||
| itkGetMacro(MaximumOutput, double) | ||
| itkGetMacro(MinimumOutput, double) | ||
| itkGetMacro(NumberOfBins, unsigned int) | ||
| itkGetMacro(Tolerance, char) | ||
| itkGetMacro(ThresholdMethod, unsigned char) | ||
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| #ifdef ITK_USE_CONCEPT_CHECKING | ||
| // Begin concept checking | ||
| itkConceptMacro( InputHasNumericTraitsCheck, | ||
| ( Concept::HasNumericTraits< InputPixelType > ) ); | ||
| itkConceptMacro( SameDimensionCheck, | ||
| ( Concept::SameDimension< InputImageDimension, OutputImageDimension > ) ); | ||
| #endif | ||
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| enum ThresholdMethod { | ||
| MAXENTROPY=1, | ||
| OTSU=2, | ||
| RENYI=3, | ||
| MOMENTS=4, | ||
| YEN=5, | ||
| ISODATA=6 | ||
| }; | ||
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| protected: | ||
| LogisticContrastEnhancementImageFilter(); | ||
| virtual ~LogisticContrastEnhancementImageFilter() {} | ||
| bool m_FlipObjectArea; | ||
| bool m_ManualTolerance; | ||
| char m_Tolerance; | ||
| double m_Alpha; | ||
| double m_Beta; | ||
| double m_MaximumOutput; | ||
| double m_MinimumOutput; | ||
| unsigned int m_NumberOfBins; | ||
| unsigned char m_ThresholdMethod; | ||
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| void GenerateData(); | ||
| private: | ||
| // const unsigned short MAX_TOLERANCE = 0.99; | ||
| LogisticContrastEnhancementImageFilter(const Self &); //purposely not implemented | ||
| void operator=(const Self &); //purposely not implemented | ||
| double sigmoid(double x, double alpha, double beta); | ||
| void checkTolerance(char tolerance); | ||
| }; | ||
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| } // end namespace itk | ||
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| #ifndef ITK_MANUAL_INSTANTIATION | ||
| #include "itkLogisticContrastEnhancementImageFilter.hxx" | ||
| #endif | ||
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| #endif |
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