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Pauli Noise Model Backend #95
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Neat & very readable, nice! I've suggestion some pythonic
code edits, typos and some other small suggestions.
One thing to note is that apply_clifford_basis_change_tensor
has now been exposed from core pytket
, which also considers phase when apply Cliffords to Paulis - this might be worth integrating at some point in the future (doesn't seem like a necessary hold up at this point though!).
qermit/noise_model/__init__.py
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@@ -14,8 +14,12 @@ | |||
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""" | |||
The mock_backend module provides custom noisy instances of the pytket AerBackend | |||
and QuantinuumBackend objects, for local testing. | |||
The noise_model module provides an assortment of noise modeling an simulation |
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noise modelling and simulation*
qermit/noise_model/noise_model.py
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return False | ||
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# Check all pauli error in this distribution are in the other. | ||
if not all( |
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Can these two checks be replaced with this?
if set(self.distribution.keys()) != set(other.distribution.keys()):
return False```
) | ||
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@classmethod | ||
def mixture(cls, distribution_list: List[ErrorDistribution]) -> ErrorDistribution: |
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Can replace the construction of merged_distribution
using this I think:
from collections import Counter
return cls(distribution = {
error: sum(distribution.distribution.get(error, 0) for distribution in distribution_list) / len(distribution_list)
for error in set(error for dist in distribution_list for error in dist.distribution)
})
qermit/noise_model/noise_model.py
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:rtype: ErrorDistribution | ||
""" | ||
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merged_distribution = {} |
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If my suggestion doesn't work, I'd type
this: Dict[Tuple[Pauli, ...], float]
qermit/noise_model/noise_model.py
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merged_distribution = {} | ||
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support = set( |
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and move this in to for error in set(sum( ....
""" | ||
return self.result_dict[handle] | ||
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def get_counts( |
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Looks like something weird has happened with the formatting in this file? the get_counts
method has gen_transpiled_circuit
inside its definition?
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It does indeed, and that's intentional. I don't want to expose gen_transpiled_circuit as a class method as the circuit generated is not of use outside of the get counts method. If the user wants to generate a noisy circuit themselves they should use the transpiiler.
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I'd reccomend moving gen_transpiled_circuit
outside of this function definition, but renaming it to _gen_transpiled_circuit
, which is standard practice for signifying a class method is for internal use instead of external use
for _ in range(n_shots % self.max_batch_size) | ||
] | ||
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for circuit_list in gen_batches(circuit, n_shots): |
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with the code for producing the counter after the function definitions?
counter += sum((result.get_counts(cbits=cbits) | ||
for result in result_list), Counter()) | ||
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return counter |
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Even if gen_transpiled_circuit
and gen_batches
are only used in get_counts
, it's a bit confusing to have them defined only within that functions scope: I'd recommend making them staticmethods of the class
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I don't want them exposed as methods at all, which is why I have done it this way.
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Similar comment to before, I'd make them class methods but rename to _gen_batches
tests/noise_model_test.py
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assert phase == 1 | ||
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# TODO: this needs more thorough checking |
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Is this still the case?
) | ||
assert stab.is_measureable(qubit_list=[Qubit(name='A', index=1)]) | ||
assert stab.is_measureable(qubit_list=[Qubit(name='A', index=0)]) | ||
assert not stab.is_measureable(qubit_list=[Qubit(name='B', index=0)]) |
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I like to add an if name == main at the end of the file and call all the files, & add ->None
to each function definition.
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I have done this for the test that do not require a temporary directory to be set up. I'm sure that it's possible to run those tests too but I've not been able to figure out how. Do you have any experience with this?
Thanks for looking this over. I've made those changes, modulo a few comments. |
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Two things left to do, one being renaming gen_rng_generator
to gen_rng
(my name suggestion said generator twice!) & moving concealed methods into underscored class methods.
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LGTM
* Uniform task labels (#36) * Make _label case uniform A VERY small PR making the case used for _label uniform. * Capitalise Ex * Pytket v1 upgrade (#41) * Upgrade to pytket v1.0.1 This primarily includes: - remove Rebase passes - change module names * Remove unused imports * Add capitilisation * Update docs with change to pytket version * Correct version requirements * Correct verson requirements Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Remove Partial SPAM correcter (#42) * remove all traces * update docs * Update build_and_test.yml * Remove copy.copy (#43) * update use of copy.copy in code remove in many cases * copy.deepcopy -> deepcopy * reintroduce necessary copy * fix typo * Add ObservableTracker.clear method (#44) * Shot splitter mitres (#40) * Add shot splitting mitres * Better python practice with shot splitting * Correct comment format * Change function name * Add a compiled shot splitting metres * Correct typing on split_index * Use OutcomeArray to gather results * Correct comment spelling * Add splitting mitres to docs * Rebuild docs Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Remove appendix from LICENSE file (#46) * Update graph visualisation (#37) * update to vertical visualisation * Update mitresgraph.png * Delete mitresgraph.png * update manual images * update mitex manual images * update docs image * rebuild docs and manual Co-authored-by: sjdilkes <[email protected]> * Add basic "_cache" attribute for storing all generated edge data from run() (#47) * add bad cache * smarten how cache works * qermit.mittask -> qermit.taskgraph * add .cache to mitres and mitex * remove redundant print * add "run_basic" method (#48) * Correct qubit mutation (#50) * Add qubit relabelling task * Correct typing * Add documentation * Add tests * Code reformatting * Correct manual * Rebuild docs * Add missing tasks to docs Co-authored-by: Daniel Mills <[email protected]> * Minor edits, rebuild docs and manual (#49) * add bad cache * smarten how cache works * qermit.mittask -> qermit.taskgraph * add .cache to mitres and mitex * add "run_basic" method * fix obvious issues * qermit -> Qermit * Update index.rst * Update index.rst * q -> Q * rebuild manual and docs * remove print * rebuild docs and manual * add "real" string back * update docs * update docs * Update pytket version to 1~(#55) * update pytket * update * Remove pytket from test requirements, and cast mean * Update zne.py * Remove use of RebaseToCliffordSingles * BLACK FORMAT Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: sjdilkes <[email protected]> * Add `characterisation` attribute to TaskGraph and pass as kwarg to TaskGraph.run (#61) * Update _version.py * Update zne_test.py * Add characterisation attribute to taskgraph allow to be passed at run * ignore numpy * set mittask characterisation attribute when running * Update frame_randomisation_test.py * update pytket version * Update frame_randomisation_test.py * revert pytket changes * update versioning * Update SPAM correction to use characterisation instead of BackendInfo * Update full_spam_test.py * use characteriastoin in CCL * update manual * Add Spectral Filtering Method (#63) * Initial commit with outline of protocol * Remove unnecessary wires * Add result extraction * Output qpo * Add test * Add characterisation cache * Add documentation * Add spectral filtering tests * Generalise tests to more complicated qpo * Add type annotation * Remove caches * Add documentation * Split FFT from formatting component * Add tests for graph generation and new FFT and formating task * Add tests, docs and type annotation for small coefficient filter * Document FFT and related tasks * Document SignalFilter * Clean up some documentation * Minor corrctions to typing * Simplify NDArray typing * Change to List type annotation * Add additioinal documentation * Address Silas PR comments * Code Formatting * Formatting and type checking * Add compiled docs * Compile manual * Add spectral fiiltering to docs index * Remove use of np array * Correct typing Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Update python version (#66) * Update copyright (#69) * Update pytket version to 1.11(#67) * Change copyright * Add noise scaling via 2 qubit gate folding (#72) * Add 2 qubit gate folding * Run black * Import isclose * Add test call to main call --------- Co-authored-by: dan-mills-cqc <[email protected]> * update docs * Add failing tests (#76) * Add failing SPAM test * Add test backends * Add pytket-quantinuum to test requirements * Remove myqos imports * Add test init * Add failing ZNE test * Add types and docs to mock backend * Fix pytket-quantinuum test version --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * ZNE Include all Qubit Map (#78) * add failing test * Add complete workflow failing test * Pass list of node maps * Correct documentation --------- Co-authored-by: dan-mills-cqc <[email protected]> * Add removed wires in get_full_transition_tomography_circuits (#75) * Add coverage for removing wires, also format * Remove added DecomposeBoxes * format * Move MockQuantinuumBackend to qermit subdirectory, update FullyConneted architeture constructed * remove pytest fails * Update test_requirements.txt * Update mock_quantinuum_backend.py * Format code and add format check to CI (#77) * Format code and add format check to CI * Revert some formatting * Add coverage to requirements * Add flake8 to test requirements * Install test requirements before running tests * Update README with formatting change * Correct formatting --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Update versions * Fix mock backend tests (#82) * Extend mock mackend gateset * Reduce optimisation level * Remove unrequired changes * Add n_cl_reg to mock quantinuum backend * Change node names to match updates quaninuum backends --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Make cache visible (#86) * Make cache visible * Add test for visible cache --------- Co-authored-by: dan-mills-cqc <[email protected]> * Use equivalence check between characterisation (#84) I believe it's okay if they are not exactly the same list of nodes? * correct duplication of experiment mitex (#85) Co-authored-by: dan-mills-cqc <[email protected]> * Docs/update docs theme (#90) * add build and .venv to .gitignore * update theme configuration in conf.py * update theme requirements * replace CQC logo with Quantinuum logo * remove refernce to old logo in index.rst * add built files to .gitignore * update copyright * update docs theme in user manual * add source code links to API docs * update old links in index * remove redundant .gitignore line * Add doc build to tests (#89) Co-authored-by: dan-mills-cqc <[email protected]> * Make Folding and Fit methods staticmethod (#87) * Remove self * Add @staticmethod decorator * Repair high compute tests --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Postselection and leakage example (#88) * Add postselection and leakage example * Add documentation * add rst files * Code formatting * add reset and reorder compilation * Add test comparing to pytket method * remove post_select from manager move to using one work postselect * remove post_select from mitres * Remove post_select from tests * Silas corrections * Correct formatting --------- Co-authored-by: dan-mills-cqc <[email protected]> * Separate NoisyAerBackend (#91) * Sperate noisyaerbackend from mock quantinuum * Correct mypy * Add docstrings on gate sets * Update test requirements * Remove commented out gate set * Correct code formatting * Move noise model definition * Correct gateset --------- Co-authored-by: dan-mills-cqc <[email protected]> * Reformat code with `black` (#92) * Reformat black * Add copyright notices * Fix mypy issues * appease CI * Update versions * Correct type annotatioin (#94) * Correct type annotatioin * Remove prints * Additional typing corrections * install testing requirements * Correct workflow formatting * Correct all type errors * Minor code style changes --------- Co-authored-by: dan-mills-cqc <[email protected]> * Pauli Noise Model Backend (#95) * Add noise model * Correct imports * Use if instead of case * Add stabiliser * Remove tqdm * Remove tqdm * Remove total * Rename to noise model module * Remove error sampler * Extend testing * Correct typing in pytket 1.21.0 * Add documentation to ErrorDistribution * Move to using counter in logical error distribution * Correct logical error simulation test * Finish noise model documentation * Document Stabiliser * Document transpiler backend * Remove reference to stabiliser * Add QermitPauli * Silas requests * Rename to set_rng and move private methods * Noise Aware ZNE (#96) * remove noise scale by 1 as default * Allow list of circuits when scaling and add noise scaled mitex * Add noise aware noise scaling * Add additional documentation * Add end to end noise aware zne test * Test scaling and merge * Repair haging test by removing plot * Review Corrections * Use ResultHandle * Move to using PTMs for scaling * Correct formatting and add docs * Additional inline docs --------- Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Modernise Build System (#98) * Use toml * bump python version * Add optional dependencies * Remove editable install * Correct toml formatting * Remove optinoal * Revet changes * Allow editable builds * Correct build system * Add authors * Add optional dependencies * Correct toml formatting * True -> true * Make optional deps optional * Use os matrix * Add runs-on * Correct MockQuantinuumBackend type annotaion --------- Co-authored-by: Daniel Mills <[email protected]> * Support parallelism in noisy simulator (#97) * Support parallelism in noisy backend * Add documentation and type annotation * Correct some doc strings * Correct test requirements * Move away from using provider * include qiskit-ibmq-provider as dependency * Check install versions * Move away from using IBMQ * Spawn threads in tests * Default to one core * Correct formatting --------- Co-authored-by: Daniel Mills <[email protected]> * Update pytket-quantinuum (#100) * Update pytket-quantinuum * Update workflow versions * Add pytket-quantinuum to docs dependencies * Add issue to project workflow (#101) * fix: Update develop (#110) * Qermit 0.5.0 (#93) * Uniform task labels (#36) * Make _label case uniform A VERY small PR making the case used for _label uniform. * Capitalise Ex * Pytket v1 upgrade (#41) * Upgrade to pytket v1.0.1 This primarily includes: - remove Rebase passes - change module names * Remove unused imports * Add capitilisation * Update docs with change to pytket version * Correct version requirements * Correct verson requirements Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Remove Partial SPAM correcter (#42) * remove all traces * update docs * Update build_and_test.yml * Remove copy.copy (#43) * update use of copy.copy in code remove in many cases * copy.deepcopy -> deepcopy * reintroduce necessary copy * fix typo * Add ObservableTracker.clear method (#44) * Shot splitter mitres (#40) * Add shot splitting mitres * Better python practice with shot splitting * Correct comment format * Change function name * Add a compiled shot splitting metres * Correct typing on split_index * Use OutcomeArray to gather results * Correct comment spelling * Add splitting mitres to docs * Rebuild docs Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Remove appendix from LICENSE file (#46) * Update graph visualisation (#37) * update to vertical visualisation * Update mitresgraph.png * Delete mitresgraph.png * update manual images * update mitex manual images * update docs image * rebuild docs and manual Co-authored-by: sjdilkes <[email protected]> * Add basic "_cache" attribute for storing all generated edge data from run() (#47) * add bad cache * smarten how cache works * qermit.mittask -> qermit.taskgraph * add .cache to mitres and mitex * remove redundant print * add "run_basic" method (#48) * Correct qubit mutation (#50) * Add qubit relabelling task * Correct typing * Add documentation * Add tests * Code reformatting * Correct manual * Rebuild docs * Add missing tasks to docs Co-authored-by: Daniel Mills <[email protected]> * Minor edits, rebuild docs and manual (#49) * add bad cache * smarten how cache works * qermit.mittask -> qermit.taskgraph * add .cache to mitres and mitex * add "run_basic" method * fix obvious issues * qermit -> Qermit * Update index.rst * Update index.rst * q -> Q * rebuild manual and docs * remove print * rebuild docs and manual * add "real" string back * update docs * update docs * Update pytket version to 1~(#55) * update pytket * update * Remove pytket from test requirements, and cast mean * Update zne.py * Remove use of RebaseToCliffordSingles * BLACK FORMAT Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: sjdilkes <[email protected]> * Add `characterisation` attribute to TaskGraph and pass as kwarg to TaskGraph.run (#61) * Update _version.py * Update zne_test.py * Add characterisation attribute to taskgraph allow to be passed at run * ignore numpy * set mittask characterisation attribute when running * Update frame_randomisation_test.py * update pytket version * Update frame_randomisation_test.py * revert pytket changes * update versioning * Update SPAM correction to use characterisation instead of BackendInfo * Update full_spam_test.py * use characteriastoin in CCL * update manual * Add Spectral Filtering Method (#63) * Initial commit with outline of protocol * Remove unnecessary wires * Add result extraction * Output qpo * Add test * Add characterisation cache * Add documentation * Add spectral filtering tests * Generalise tests to more complicated qpo * Add type annotation * Remove caches * Add documentation * Split FFT from formatting component * Add tests for graph generation and new FFT and formating task * Add tests, docs and type annotation for small coefficient filter * Document FFT and related tasks * Document SignalFilter * Clean up some documentation * Minor corrctions to typing * Simplify NDArray typing * Change to List type annotation * Add additioinal documentation * Address Silas PR comments * Code Formatting * Formatting and type checking * Add compiled docs * Compile manual * Add spectral fiiltering to docs index * Remove use of np array * Correct typing Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> * Update python version (#66) * Update copyright (#69) * Update pytket version to 1.11(#67) * Change copyright * Add noise scaling via 2 qubit gate folding (#72) * Add 2 qubit gate folding * Run black * Import isclose * Add test call to main call --------- Co-authored-by: dan-mills-cqc <[email protected]> * update docs * Add failing tests (#76) * Add failing SPAM test * Add test backends * Add pytket-quantinuum to test requirements * Remove myqos imports * Add test init * Add failing ZNE test * Add types and docs to mock backend * Fix pytket-quantinuum test version --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * ZNE Include all Qubit Map (#78) * add failing test * Add complete workflow failing test * Pass list of node maps * Correct documentation --------- Co-authored-by: dan-mills-cqc <[email protected]> * Add removed wires in get_full_transition_tomography_circuits (#75) * Add coverage for removing wires, also format * Remove added DecomposeBoxes * format * Move MockQuantinuumBackend to qermit subdirectory, update FullyConneted architeture constructed * remove pytest fails * Update test_requirements.txt * Update mock_quantinuum_backend.py * Format code and add format check to CI (#77) * Format code and add format check to CI * Revert some formatting * Add coverage to requirements * Add flake8 to test requirements * Install test requirements before running tests * Update README with formatting change * Correct formatting --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Update versions * Fix mock backend tests (#82) * Extend mock mackend gateset * Reduce optimisation level * Remove unrequired changes * Add n_cl_reg to mock quantinuum backend * Change node names to match updates quaninuum backends --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Make cache visible (#86) * Make cache visible * Add test for visible cache --------- Co-authored-by: dan-mills-cqc <[email protected]> * Use equivalence check between characterisation (#84) I believe it's okay if they are not exactly the same list of nodes? * correct duplication of experiment mitex (#85) Co-authored-by: dan-mills-cqc <[email protected]> * Docs/update docs theme (#90) * add build and .venv to .gitignore * update theme configuration in conf.py * update theme requirements * replace CQC logo with Quantinuum logo * remove refernce to old logo in index.rst * add built files to .gitignore * update copyright * update docs theme in user manual * add source code links to API docs * update old links in index * remove redundant .gitignore line * Add doc build to tests (#89) Co-authored-by: dan-mills-cqc <[email protected]> * Make Folding and Fit methods staticmethod (#87) * Remove self * Add @staticmethod decorator * Repair high compute tests --------- Co-authored-by: dan-mills-cqc <[email protected]> Co-authored-by: dan-mills-cqc <[email protected]> * Postselection and leakage example (#88) * Add postselection and leakage example * Add documentation * add rst files * Code formatting * add reset and reorder compilation * Add test comparing to pytket method * remove post_select from manager move to using one work postselect * remove post_select from mitres * Remove post_select from tests * Silas corrections * Correct formatting --------- Co-authored-by: dan-mills-cqc <[email protected]> * Separate NoisyAerBackend (#91) * Sperate noisyaerbackend from mock quantinuum * Correct mypy * Add docstrings on gate sets * Update test requirements * Remove commented out gate set * Correct code formatting * Move noise model definition * Correct gateset --------- Co-authored-by: dan-mills-cqc <[email protected]> * Reformat code with `black` (#92) * Reformat black * Add copyright notices * Fix mypy issues * appease CI * Update versions * Correct type annotatioin (#94) * Correct type annotatioin * Remove prints * Additional typing corrections * install testing requirements * Correct workflow formatting * Correct all type errors * Minor code style changes --------- Co-authored-by: dan-mills-cqc <[email protected]> --------- Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Silas Dilkes <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Seyon Sivarajah <[email protected]> Co-authored-by: sjdilkes <[email protected]> Co-authored-by: cqc-melf <[email protected]> Co-authored-by: CalMacCQ <[email protected]> * Convert tests to floats * Correct typing * Ignore sympy when typing --------- Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Silas Dilkes <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Seyon Sivarajah <[email protected]> Co-authored-by: sjdilkes <[email protected]> Co-authored-by: cqc-melf <[email protected]> Co-authored-by: CalMacCQ <[email protected]> --------- Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Silas Dilkes <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Seyon Sivarajah <[email protected]> Co-authored-by: sjdilkes <[email protected]> Co-authored-by: cqc-melf <[email protected]> Co-authored-by: CalMacCQ <[email protected]> Co-authored-by: Daniel Mills <[email protected]> Co-authored-by: Daniel Mills <[email protected]>
This adds a sampling backend which adds coherent Pauli errors to each shot of a circuit. A representative use case would be:
NoiseModel
itself adds additional functionality to perform simulation of logical errors (errors in the form of Pauli strings) in the case of Clifford circuits.