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Make simpleaf index take probe and feature CSV files #175

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merged 7 commits into from
Jan 6, 2025

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an-altosian
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I did the following things:

  1. added a probe_csv argument to simpleaf index, so that it can process probe reference CSV. This covers visium protocols.
  2. added a feature_csv argument to simpleaf index, so that it can process feature reference CSV. This covers feature barocding.

Still need to write doc for these two arguments. will do it tomorrow.

@an-altosian an-altosian marked this pull request as ready for review January 5, 2025 16:17
@rob-p rob-p merged commit 0f7d87a into COMBINE-lab:dev Jan 6, 2025
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3 participants